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5TMC

Re-refinement of Thermus thermopiles DNA-directed RNA polymerase structure

Functional Information from GO Data
ChainGOidnamespacecontents
A0000428cellular_componentDNA-directed RNA polymerase complex
A0003677molecular_functionDNA binding
A0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006351biological_processDNA-templated transcription
A0016779molecular_functionnucleotidyltransferase activity
A0034062molecular_function5'-3' RNA polymerase activity
A0046983molecular_functionprotein dimerization activity
B0000428cellular_componentDNA-directed RNA polymerase complex
B0003677molecular_functionDNA binding
B0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006351biological_processDNA-templated transcription
B0016779molecular_functionnucleotidyltransferase activity
B0034062molecular_function5'-3' RNA polymerase activity
B0046983molecular_functionprotein dimerization activity
C0000428cellular_componentDNA-directed RNA polymerase complex
C0003677molecular_functionDNA binding
C0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
C0006351biological_processDNA-templated transcription
C0016779molecular_functionnucleotidyltransferase activity
C0032549molecular_functionribonucleoside binding
C0034062molecular_function5'-3' RNA polymerase activity
D0000287molecular_functionmagnesium ion binding
D0000428cellular_componentDNA-directed RNA polymerase complex
D0003677molecular_functionDNA binding
D0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
D0005515molecular_functionprotein binding
D0006351biological_processDNA-templated transcription
D0008270molecular_functionzinc ion binding
D0016779molecular_functionnucleotidyltransferase activity
D0034062molecular_function5'-3' RNA polymerase activity
D0046872molecular_functionmetal ion binding
E0000428cellular_componentDNA-directed RNA polymerase complex
E0003677molecular_functionDNA binding
E0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
E0006351biological_processDNA-templated transcription
E0016779molecular_functionnucleotidyltransferase activity
E0034062molecular_function5'-3' RNA polymerase activity
F0003677molecular_functionDNA binding
F0003700molecular_functionDNA-binding transcription factor activity
F0005737cellular_componentcytoplasm
F0006352biological_processDNA-templated transcription initiation
F0006355biological_processregulation of DNA-templated transcription
F0010468biological_processregulation of gene expression
F0016987molecular_functionsigma factor activity
F0046872molecular_functionmetal ion binding
F2000142biological_processregulation of DNA-templated transcription initiation
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue PO4 A 401
ChainResidue
ATHR51
ALYS83
ALEU85
AVAL170
AASP202

site_idAC2
Number of Residues5
Detailsbinding site for residue MG C 1201
ChainResidue
CLYS1004
CPRO793
CPRO794
CGLY795
CGLU796

site_idAC3
Number of Residues2
Detailsbinding site for residue MG D 1601
ChainResidue
CGLU685
DG4P1605

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN D 1602
ChainResidue
DCYS58
DCYS60
DCYS73
DCYS76

site_idAC5
Number of Residues5
Detailsbinding site for residue ZN D 1603
ChainResidue
DCYS1112
DCYS1194
DGLN1195
DCYS1201
DCYS1204

site_idAC6
Number of Residues4
Detailsbinding site for residue MG D 1604
ChainResidue
DASP739
DASP741
DASP743
DHOH1745

site_idAC7
Number of Residues12
Detailsbinding site for residue G4P D 1605
ChainResidue
CSER878
CARG879
DASN737
DARG783
DLYS908
DARG1029
DGLU1231
DGLN1235
DMG1601
DMG1606
DHOH1707
DHOH1730

site_idAC8
Number of Residues4
Detailsbinding site for residue MG D 1606
ChainResidue
DLYS908
DG4P1605
DHOH1707
DHOH1730

Functional Information from PROSITE/UniProt
site_idPS01166
Number of Residues13
DetailsRNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
ChainResidueDetails
CGLY836-VAL848

site_idPS00716
Number of Residues27
DetailsSIGMA70_2 Sigma-70 factors family signature 2. TleEVGaffgVTrerIrQIEnkaLrkL
ChainResidueDetails
FTHR382-LEU408

site_idPS00867
Number of Residues8
DetailsCPSASE_2 Carbamoyl-phosphate synthase subdomain signature 2. LIEANLRL
ChainResidueDetails
FLEU187-LEU194

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues19
DetailsDNA_BIND: H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963
ChainResidueDetails
DASP739
DASP741
DASP743
DCYS1112
DCYS1194
DCYS1201
DCYS1204
FLEU383-ASN402
DCYS60
DCYS73
DCYS76

219869

PDB entries from 2024-05-15

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