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5PAF

Crystal Structure of Factor VIIa in complex with N-(2-amino-1H-benzimidazol-5-yl)-2-[3-[(2-amino-2-oxoethyl)-methylsulfonylamino]-5-chlorophenyl]acetamide;2,2,2-trifluoroacetic acid

Functional Information from GO Data
ChainGOidnamespacecontents
B0004252molecular_functionserine-type endopeptidase activity
B0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue GOL A 301
ChainResidue
AGLY196
ALYS197
AILE198
ALEU201
AGLU202
BGLY414
BTRP416
BGOL507

site_idAC2
Number of Residues8
Detailsbinding site for residue GOL A 302
ChainResidue
ACYS174
ASER179
ALEU180
AHOH403
AHOH410
AHOH411
BHOH809
AARG173

site_idAC3
Number of Residues6
Detailsbinding site for residue CA B 501
ChainResidue
BGLU270
BASP272
BGLU275
BGLU280
BHOH641
BHOH802

site_idAC4
Number of Residues2
Detailsbinding site for residue CL B 502
ChainResidue
BARG262
BVAL459

site_idAC5
Number of Residues6
Detailsbinding site for residue SO4 B 503
ChainResidue
BMET366
BTHR367
BARG439
BHOH615
BHOH622
BHOH718

site_idAC6
Number of Residues8
Detailsbinding site for residue SO4 B 504
ChainResidue
BHIS253
BLYS401
BGLY402
BSER404
B7LR508
BHOH612
BHOH719
BHOH752

site_idAC7
Number of Residues6
Detailsbinding site for residue SO4 B 505
ChainResidue
AHOH403
BSER453
BGLU454
BHOH701
BHOH779
BHOH809

site_idAC8
Number of Residues5
Detailsbinding site for residue GOL B 506
ChainResidue
BSER374
BPRO381
BHIS433
BPHE434
BHOH662

site_idAC9
Number of Residues9
Detailsbinding site for residue GOL B 507
ChainResidue
AILE198
AGOL301
BCYS219
BGLU223
BLEU340
BTRP416
BHOH602
BHOH649
BHOH789

site_idAD1
Number of Residues17
Detailsbinding site for residue 7LR B 508
ChainResidue
BHIS253
BASP256
BGLY297
BASP302
BASP398
BSER399
BCYS400
BSER404
BVAL422
BSER423
BTRP424
BGLY425
BGLY427
BCYS428
BSO4504
BHOH768
BHOH780

site_idAD2
Number of Residues5
Detailsbinding site for residue TFA B 509
ChainResidue
BASN300
BHIS301
BTHR384
BTYR386
BHOH724

Functional Information from PROSITE/UniProt
site_idPS01186
Number of Residues16
DetailsEGF_2 EGF-like domain signature 2. CrCheGYslladgvsC
ChainResidueDetails
ACYS172-CYS187

site_idPS00134
Number of Residues6
DetailsTRYPSIN_HIS Serine proteases, trypsin family, histidine active site. VSAAHC
ChainResidueDetails
BVAL249-CYS254

site_idPS00135
Number of Residues12
DetailsTRYPSIN_SER Serine proteases, trypsin family, serine active site. DSckGDSGGPHA
ChainResidueDetails
BASP398-ALA409

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Charge relay system => ECO:0000250
ChainResidueDetails
BHIS253
BASP302
BSER404

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
BASP398

site_idSWS_FT_FI3
Number of Residues1
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19167329, ECO:0000269|PubMed:3264725
ChainResidueDetails
BASN382

221051

PDB entries from 2024-06-12

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