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5OQL

Cryo-EM structure of the 90S pre-ribosome from Chaetomium thermophilum

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
00000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
00005730cellular_componentnucleolus
a0003723molecular_functionRNA binding
a0005634cellular_componentnucleus
a0005730cellular_componentnucleolus
a0006364biological_processrRNA processing
a0019843molecular_functionrRNA binding
a0030515molecular_functionsnoRNA binding
a0032040cellular_componentsmall-subunit processome
a0034457cellular_componentMpp10 complex
a0042254biological_processribosome biogenesis
a0042274biological_processribosomal small subunit biogenesis
a1990904cellular_componentribonucleoprotein complex
A0000028biological_processribosomal small subunit assembly
A0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A0005730cellular_componentnucleolus
A0032040cellular_componentsmall-subunit processome
A0034388cellular_componentPwp2p-containing subcomplex of 90S preribosome
A0042254biological_processribosome biogenesis
b0005730cellular_componentnucleolus
b0006364biological_processrRNA processing
b0019843molecular_functionrRNA binding
b0030515molecular_functionsnoRNA binding
b0032040cellular_componentsmall-subunit processome
b0034457cellular_componentMpp10 complex
b0042134molecular_functionrRNA primary transcript binding
b0042254biological_processribosome biogenesis
b1990904cellular_componentribonucleoprotein complex
B0005634cellular_componentnucleus
B0005730cellular_componentnucleolus
B0030490biological_processmaturation of SSU-rRNA
B0030692cellular_componentNoc4p-Nop14p complex
B0032040cellular_componentsmall-subunit processome
B0042254biological_processribosome biogenesis
c0005634cellular_componentnucleus
c0005730cellular_componentnucleolus
c0005732cellular_componentsno(s)RNA-containing ribonucleoprotein complex
c0006364biological_processrRNA processing
c0032040cellular_componentsmall-subunit processome
c0034457cellular_componentMpp10 complex
c0042254biological_processribosome biogenesis
c1990904cellular_componentribonucleoprotein complex
C0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
C0005730cellular_componentnucleolus
C0032040cellular_componentsmall-subunit processome
d0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
d0005634cellular_componentnucleus
d0005730cellular_componentnucleolus
d0016567biological_processprotein ubiquitination
d0032040cellular_componentsmall-subunit processome
d1990904cellular_componentribonucleoprotein complex
D0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
D0003723molecular_functionRNA binding
D0030686cellular_component90S preribosome
D0032040cellular_componentsmall-subunit processome
D0034455cellular_componentt-UTP complex
e0005730cellular_componentnucleolus
e0006364biological_processrRNA processing
e0008168molecular_functionmethyltransferase activity
e0019843molecular_functionrRNA binding
e0032040cellular_componentsmall-subunit processome
e0032259biological_processmethylation
e0042254biological_processribosome biogenesis
e0070037molecular_functionrRNA (pseudouridine) methyltransferase activity
e0070475biological_processrRNA base methylation
E0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
E0005634cellular_componentnucleus
E0005730cellular_componentnucleolus
E0006396biological_processRNA processing
E0030515molecular_functionsnoRNA binding
E0032040cellular_componentsmall-subunit processome
E0034388cellular_componentPwp2p-containing subcomplex of 90S preribosome
f0005730cellular_componentnucleolus
f0006364biological_processrRNA processing
f0008168molecular_functionmethyltransferase activity
f0019843molecular_functionrRNA binding
f0032040cellular_componentsmall-subunit processome
f0032259biological_processmethylation
f0042254biological_processribosome biogenesis
f0070037molecular_functionrRNA (pseudouridine) methyltransferase activity
f0070475biological_processrRNA base methylation
F0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
F0005634cellular_componentnucleus
F0005730cellular_componentnucleolus
F0030686cellular_component90S preribosome
F0032040cellular_componentsmall-subunit processome
g0003676molecular_functionnucleic acid binding
g0003723molecular_functionRNA binding
g0005634cellular_componentnucleus
g0005730cellular_componentnucleolus
g0006364biological_processrRNA processing
g0032040cellular_componentsmall-subunit processome
g0042254biological_processribosome biogenesis
g1990904cellular_componentribonucleoprotein complex
G0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
G0005634cellular_componentnucleus
G0005730cellular_componentnucleolus
G0006364biological_processrRNA processing
G0030515molecular_functionsnoRNA binding
G0030686cellular_component90S preribosome
G0032040cellular_componentsmall-subunit processome
G0034455cellular_componentt-UTP complex
G0042254biological_processribosome biogenesis
G0045943biological_processpositive regulation of transcription by RNA polymerase I
G1990904cellular_componentribonucleoprotein complex
h0003676molecular_functionnucleic acid binding
h0003723molecular_functionRNA binding
h0005634cellular_componentnucleus
h0005730cellular_componentnucleolus
h0005737cellular_componentcytoplasm
h0042254biological_processribosome biogenesis
H0005634cellular_componentnucleus
H0005730cellular_componentnucleolus
H0006364biological_processrRNA processing
H0032040cellular_componentsmall-subunit processome
H0042254biological_processribosome biogenesis
H1990904cellular_componentribonucleoprotein complex
i0000049molecular_functiontRNA binding
i0000154biological_processrRNA modification
i0002101biological_processtRNA wobble cytosine modification
i0005524molecular_functionATP binding
i0005634cellular_componentnucleus
i0005730cellular_componentnucleolus
i0006364biological_processrRNA processing
i0008033biological_processtRNA processing
i0008080molecular_functionN-acetyltransferase activity
i0016072biological_processrRNA metabolic process
i0016746molecular_functionacyltransferase activity
i0016747molecular_functionacyltransferase activity, transferring groups other than amino-acyl groups
i0030686cellular_component90S preribosome
i0034470biological_processobsolete ncRNA processing
i0042274biological_processribosomal small subunit biogenesis
i0051391biological_processtRNA acetylation
i0051392molecular_functiontRNA N-acetyltransferase activity
i1904812biological_processrRNA acetylation involved in maturation of SSU-rRNA
i1990883molecular_functionrRNA cytidine N-acetyltransferase activity
I0005634cellular_componentnucleus
I0005730cellular_componentnucleolus
I0030490biological_processmaturation of SSU-rRNA
I0030515molecular_functionsnoRNA binding
I0032040cellular_componentsmall-subunit processome
I0034388cellular_componentPwp2p-containing subcomplex of 90S preribosome
I0042254biological_processribosome biogenesis
j0000049molecular_functiontRNA binding
j0000154biological_processrRNA modification
j0002101biological_processtRNA wobble cytosine modification
j0005524molecular_functionATP binding
j0005634cellular_componentnucleus
j0005730cellular_componentnucleolus
j0006364biological_processrRNA processing
j0008033biological_processtRNA processing
j0008080molecular_functionN-acetyltransferase activity
j0016072biological_processrRNA metabolic process
j0016746molecular_functionacyltransferase activity
j0016747molecular_functionacyltransferase activity, transferring groups other than amino-acyl groups
j0030686cellular_component90S preribosome
j0034470biological_processobsolete ncRNA processing
j0042274biological_processribosomal small subunit biogenesis
j0051391biological_processtRNA acetylation
j0051392molecular_functiontRNA N-acetyltransferase activity
j1904812biological_processrRNA acetylation involved in maturation of SSU-rRNA
j1990883molecular_functionrRNA cytidine N-acetyltransferase activity
J0000472biological_processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J0000480biological_processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J0005730cellular_componentnucleolus
J0006364biological_processrRNA processing
J0030686cellular_component90S preribosome
J0032040cellular_componentsmall-subunit processome
J0034511molecular_functionU3 snoRNA binding
k0003723molecular_functionRNA binding
k0005634cellular_componentnucleus
k0005730cellular_componentnucleolus
k0006396biological_processRNA processing
K0005634cellular_componentnucleus
K0005730cellular_componentnucleolus
K0006364biological_processrRNA processing
K0032040cellular_componentsmall-subunit processome
l0003735molecular_functionstructural constituent of ribosome
l0005737cellular_componentcytoplasm
l0005829cellular_componentcytosol
l0005840cellular_componentribosome
l0006412biological_processtranslation
l0022627cellular_componentcytosolic small ribosomal subunit
l1990904cellular_componentribonucleoprotein complex
L0005634cellular_componentnucleus
L0005730cellular_componentnucleolus
L0006364biological_processrRNA processing
L0045943biological_processpositive regulation of transcription by RNA polymerase I
m0003723molecular_functionRNA binding
m0003735molecular_functionstructural constituent of ribosome
m0005840cellular_componentribosome
m0006412biological_processtranslation
m0019843molecular_functionrRNA binding
m0022627cellular_componentcytosolic small ribosomal subunit
m1990904cellular_componentribonucleoprotein complex
M0003723molecular_functionRNA binding
M0005634cellular_componentnucleus
M0005730cellular_componentnucleolus
M0006364biological_processrRNA processing
M0042254biological_processribosome biogenesis
M0045943biological_processpositive regulation of transcription by RNA polymerase I
M2000234biological_processpositive regulation of rRNA processing
n0000028biological_processribosomal small subunit assembly
n0003723molecular_functionRNA binding
n0003729molecular_functionmRNA binding
n0003735molecular_functionstructural constituent of ribosome
n0005840cellular_componentribosome
n0006412biological_processtranslation
n0015935cellular_componentsmall ribosomal subunit
n0019843molecular_functionrRNA binding
n0022627cellular_componentcytosolic small ribosomal subunit
n1990904cellular_componentribonucleoprotein complex
N0005730cellular_componentnucleolus
N0006364biological_processrRNA processing
N0032040cellular_componentsmall-subunit processome
N0034388cellular_componentPwp2p-containing subcomplex of 90S preribosome
o0003735molecular_functionstructural constituent of ribosome
o0005840cellular_componentribosome
o0006412biological_processtranslation
o1990904cellular_componentribonucleoprotein complex
O0006364biological_processrRNA processing
O0032040cellular_componentsmall-subunit processome
O0034388cellular_componentPwp2p-containing subcomplex of 90S preribosome
p0003735molecular_functionstructural constituent of ribosome
p0005840cellular_componentribosome
p0006364biological_processrRNA processing
p0006412biological_processtranslation
p0022627cellular_componentcytosolic small ribosomal subunit
p0030686cellular_component90S preribosome
p0032040cellular_componentsmall-subunit processome
p0042274biological_processribosomal small subunit biogenesis
p1990904cellular_componentribonucleoprotein complex
P0004540molecular_functionRNA nuclease activity
P0005730cellular_componentnucleolus
P0006364biological_processrRNA processing
P0032040cellular_componentsmall-subunit processome
P0042254biological_processribosome biogenesis
q0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
q0003735molecular_functionstructural constituent of ribosome
q0005840cellular_componentribosome
q0006412biological_processtranslation
q0022627cellular_componentcytosolic small ribosomal subunit
q1990904cellular_componentribonucleoprotein complex
Q0000470biological_processmaturation of LSU-rRNA
Q0003723molecular_functionRNA binding
Q0022625cellular_componentcytosolic large ribosomal subunit
Q0030686cellular_component90S preribosome
Q1990904cellular_componentribonucleoprotein complex
r0003723molecular_functionRNA binding
r0003735molecular_functionstructural constituent of ribosome
r0005840cellular_componentribosome
r0006412biological_processtranslation
r0015935cellular_componentsmall ribosomal subunit
r0019843molecular_functionrRNA binding
r0022627cellular_componentcytosolic small ribosomal subunit
r0042274biological_processribosomal small subunit biogenesis
r1990904cellular_componentribonucleoprotein complex
R0000494biological_processbox C/D sno(s)RNA 3'-end processing
R0003723molecular_functionRNA binding
R0005730cellular_componentnucleolus
R0006338biological_processchromatin remodeling
R0006364biological_processrRNA processing
R0008168molecular_functionmethyltransferase activity
R0008649molecular_functionrRNA methyltransferase activity
R0015030cellular_componentCajal body
R0031167biological_processrRNA methylation
R0031428cellular_componentbox C/D methylation guide snoRNP complex
R0032040cellular_componentsmall-subunit processome
R0032259biological_processmethylation
R1990259molecular_functionhistone H2AQ104 methyltransferase activity
s0003735molecular_functionstructural constituent of ribosome
s0005730cellular_componentnucleolus
s0005840cellular_componentribosome
s0006412biological_processtranslation
s0022627cellular_componentcytosolic small ribosomal subunit
s0070181molecular_functionsmall ribosomal subunit rRNA binding
s1990904cellular_componentribonucleoprotein complex
S0000494biological_processbox C/D sno(s)RNA 3'-end processing
S0003723molecular_functionRNA binding
S0005730cellular_componentnucleolus
S0006338biological_processchromatin remodeling
S0006364biological_processrRNA processing
S0008168molecular_functionmethyltransferase activity
S0008649molecular_functionrRNA methyltransferase activity
S0015030cellular_componentCajal body
S0031167biological_processrRNA methylation
S0031428cellular_componentbox C/D methylation guide snoRNP complex
S0032040cellular_componentsmall-subunit processome
S0032259biological_processmethylation
S1990259molecular_functionhistone H2AQ104 methyltransferase activity
t0000028biological_processribosomal small subunit assembly
t0003735molecular_functionstructural constituent of ribosome
t0005840cellular_componentribosome
t0006412biological_processtranslation
t0022627cellular_componentcytosolic small ribosomal subunit
t1990904cellular_componentribonucleoprotein complex
T0030515molecular_functionsnoRNA binding
T0031428cellular_componentbox C/D methylation guide snoRNP complex
T0032040cellular_componentsmall-subunit processome
u0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
u0003723molecular_functionRNA binding
u0003735molecular_functionstructural constituent of ribosome
u0005840cellular_componentribosome
u0006412biological_processtranslation
u0022627cellular_componentcytosolic small ribosomal subunit
u1990904cellular_componentribonucleoprotein complex
U0005634cellular_componentnucleus
U0005730cellular_componentnucleolus
U0030515molecular_functionsnoRNA binding
U0031428cellular_componentbox C/D methylation guide snoRNP complex
U0032040cellular_componentsmall-subunit processome
U1990904cellular_componentribonucleoprotein complex
v0003735molecular_functionstructural constituent of ribosome
v0005840cellular_componentribosome
v0006412biological_processtranslation
v0022627cellular_componentcytosolic small ribosomal subunit
v1990904cellular_componentribonucleoprotein complex
V0000398biological_processmRNA splicing, via spliceosome
V0000470biological_processmaturation of LSU-rRNA
V0003723molecular_functionRNA binding
V0005634cellular_componentnucleus
V0005681cellular_componentspliceosomal complex
V0005730cellular_componentnucleolus
V0006397biological_processmRNA processing
V0008380biological_processRNA splicing
V0022625cellular_componentcytosolic large ribosomal subunit
V0030490biological_processmaturation of SSU-rRNA
V0031428cellular_componentbox C/D methylation guide snoRNP complex
V0032040cellular_componentsmall-subunit processome
V0042254biological_processribosome biogenesis
V0046540cellular_componentU4/U6 x U5 tri-snRNP complex
V0071011cellular_componentprecatalytic spliceosome
V1990904cellular_componentribonucleoprotein complex
w0003735molecular_functionstructural constituent of ribosome
w0005840cellular_componentribosome
w0006412biological_processtranslation
w0022627cellular_componentcytosolic small ribosomal subunit
w1990904cellular_componentribonucleoprotein complex
W0000398biological_processmRNA splicing, via spliceosome
W0000470biological_processmaturation of LSU-rRNA
W0003723molecular_functionRNA binding
W0005634cellular_componentnucleus
W0005681cellular_componentspliceosomal complex
W0005730cellular_componentnucleolus
W0006397biological_processmRNA processing
W0008380biological_processRNA splicing
W0022625cellular_componentcytosolic large ribosomal subunit
W0030490biological_processmaturation of SSU-rRNA
W0031428cellular_componentbox C/D methylation guide snoRNP complex
W0032040cellular_componentsmall-subunit processome
W0042254biological_processribosome biogenesis
W0046540cellular_componentU4/U6 x U5 tri-snRNP complex
W0071011cellular_componentprecatalytic spliceosome
W1990904cellular_componentribonucleoprotein complex
x0003735molecular_functionstructural constituent of ribosome
x0005840cellular_componentribosome
x0006412biological_processtranslation
x0015935cellular_componentsmall ribosomal subunit
x0022627cellular_componentcytosolic small ribosomal subunit
x1990904cellular_componentribonucleoprotein complex
X0005634cellular_componentnucleus
X0030515molecular_functionsnoRNA binding
X0032040cellular_componentsmall-subunit processome
X0034511molecular_functionU3 snoRNA binding
y0003735molecular_functionstructural constituent of ribosome
y0005737cellular_componentcytoplasm
y0005840cellular_componentribosome
y0006412biological_processtranslation
y0008168molecular_functionmethyltransferase activity
y0032259biological_processmethylation
y1990904cellular_componentribonucleoprotein complex
Y0000479biological_processendonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Y0003824molecular_functioncatalytic activity
Y0004521molecular_functionRNA endonuclease activity
Y0005634cellular_componentnucleus
Y0005730cellular_componentnucleolus
Y0006396biological_processRNA processing
Y0042254biological_processribosome biogenesis
z0000028biological_processribosomal small subunit assembly
z0003735molecular_functionstructural constituent of ribosome
z0005840cellular_componentribosome
z0006412biological_processtranslation
z0022627cellular_componentcytosolic small ribosomal subunit
z0030490biological_processmaturation of SSU-rRNA
Z0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Z0000479biological_processendonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Z0003924molecular_functionGTPase activity
Z0005525molecular_functionGTP binding
Z0005634cellular_componentnucleus
Z0005730cellular_componentnucleolus
Z0030686cellular_component90S preribosome
Z0034511molecular_functionU3 snoRNA binding
Z0042254biological_processribosome biogenesis
Functional Information from PROSITE/UniProt
site_idPS00961
Number of Residues9
DetailsRIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL
ChainResidueDetails
zGLU59-LEU67

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GyvILTTSaGIMdheeAR
ChainResidueDetails
wGLY100-ARG117

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. VrkHLernRkDkdSkfrLilIesrihrLarY
ChainResidueDetails
sVAL98-TYR128

site_idPS00948
Number of Residues14
DetailsRIBOSOMAL_S7E Ribosomal protein S7e signature. RLtRELEKKFSdRH
ChainResidueDetails
pARG82-HIS95

site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsLMmhgrnnGKKlmavrIVahA
ChainResidueDetails
nGLU78-ALA104

site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CeeknVPYvyVpSKvaLG
ChainResidueDetails
VCYS72-GLY89

site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtlVYKlglAkSihhARvLI
ChainResidueDetails
rLEU103-ILE127

site_idPS00578
Number of Residues12
DetailsRIBOSOMAL_S6E Ribosomal protein S6e signature. ITGGnDkqGfPM
ChainResidueDetails
oILE52-MET63

site_idPS00566
Number of Residues15
DetailsFIBRILLARIN Fibrillarin signature. GAVYAVEFShRsgRD
ChainResidueDetails
RGLY178-ASP192

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GMkIgrieDvTPtPSD
ChainResidueDetails
tLEU115-ASP137

site_idPS00529
Number of Residues23
DetailsRIBOSOMAL_S24E Ribosomal protein S24e signature. YGggKTtGFAlIYDSpealkkfE
ChainResidueDetails
yTYR395-GLU417

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR
ChainResidueDetails
xLYS62-ARG69

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhtSQvyAvrqAiAKSI
ChainResidueDetails
uGLY71-ILE89

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDmVvVgQcRPLS
ChainResidueDetails
vGLY125-SER137

site_idPS00237
Number of Residues17
DetailsG_PROTEIN_RECEP_F1_1 G-protein coupled receptors family 1 signature. VETsVIGSVATDRSIiL
ChainResidueDetails
dVAL208-LEU224

site_idPS00528
Number of Residues15
DetailsRIBOSOMAL_S4E Ribosomal protein S4e signature. HqKRLSaPshWlLdK
ChainResidueDetails
mHIS8-LYS22

site_idPS01191
Number of Residues13
DetailsRIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkGRIfEvCLaDL
ChainResidueDetails
lLEU61-LEU73

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. LATGaaDgAIKIWDI
ChainResidueDetails
JLEU126-ILE140
AILE355-VAL369
ALEU397-LEU411
dILE82-LEU96
OVAL637-PHE651
OILE722-LEU736
JVAL615-LEU629
LLEU160-LEU174
LLEU205-ALA219
FMET315-ILE329
ILEU125-LEU139
ILEU189-LEU203
IMET440-ILE454
IVAL523-PHE537

219140

PDB entries from 2024-05-01

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