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5OOQ

Structure of the Mtr4 Nop53 Complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000292biological_processRNA fragment catabolic process
A0000460biological_processmaturation of 5.8S rRNA
A0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0003724molecular_functionRNA helicase activity
A0003729molecular_functionmRNA binding
A0003824molecular_functioncatalytic activity
A0004386molecular_functionhelicase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005730cellular_componentnucleolus
A0006364biological_processrRNA processing
A0006397biological_processmRNA processing
A0006401biological_processRNA catabolic process
A0008143molecular_functionpoly(A) binding
A0016075biological_processrRNA catabolic process
A0016491molecular_functionoxidoreductase activity
A0016787molecular_functionhydrolase activity
A0016887molecular_functionATP hydrolysis activity
A0031499cellular_componentTRAMP complex
A0034458molecular_function3'-5' RNA helicase activity
A0034475biological_processU4 snRNA 3'-end processing
A0034476biological_processU5 snRNA 3'-end processing
A0071028biological_processnuclear mRNA surveillance
A0071031biological_processnuclear mRNA surveillance of mRNA 3'-end processing
A0071035biological_processnuclear polyadenylation-dependent rRNA catabolic process
A0071038biological_processTRAMP-dependent tRNA surveillance pathway
A0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
A0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
B0000292biological_processRNA fragment catabolic process
B0000460biological_processmaturation of 5.8S rRNA
B0000467biological_processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
B0003676molecular_functionnucleic acid binding
B0003677molecular_functionDNA binding
B0003723molecular_functionRNA binding
B0003724molecular_functionRNA helicase activity
B0003729molecular_functionmRNA binding
B0003824molecular_functioncatalytic activity
B0004386molecular_functionhelicase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005730cellular_componentnucleolus
B0006364biological_processrRNA processing
B0006397biological_processmRNA processing
B0006401biological_processRNA catabolic process
B0008143molecular_functionpoly(A) binding
B0016075biological_processrRNA catabolic process
B0016491molecular_functionoxidoreductase activity
B0016787molecular_functionhydrolase activity
B0016887molecular_functionATP hydrolysis activity
B0031499cellular_componentTRAMP complex
B0034458molecular_function3'-5' RNA helicase activity
B0034475biological_processU4 snRNA 3'-end processing
B0034476biological_processU5 snRNA 3'-end processing
B0071028biological_processnuclear mRNA surveillance
B0071031biological_processnuclear mRNA surveillance of mRNA 3'-end processing
B0071035biological_processnuclear polyadenylation-dependent rRNA catabolic process
B0071038biological_processTRAMP-dependent tRNA surveillance pathway
B0071042biological_processnuclear polyadenylation-dependent mRNA catabolic process
B0071051biological_processpoly(A)-dependent snoRNA 3'-end processing
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue SO4 A 1101
ChainResidue
ATHR173
ASER174
AALA175
AGLY176
ALYS177
ATHR178

site_idAC2
Number of Residues1
Detailsbinding site for residue SO4 A 1102
ChainResidue
AARG887

site_idAC3
Number of Residues1
Detailsbinding site for residue SO4 A 1103
ChainResidue
AARG887

site_idAC4
Number of Residues6
Detailsbinding site for residue SO4 B 1101
ChainResidue
BSER174
BALA175
BGLY176
BLYS177
BTHR178
BTHR173

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 B 1102
ChainResidue
BLYS834
BHOH1204

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00541
ChainResidueDetails
AALA171
BALA171

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956, ECO:0007744|PubMed:19779198
ChainResidueDetails
ASER84
BSER84

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956
ChainResidueDetails
ASER843
BSER843

221051

PDB entries from 2024-06-12

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