5ON8
Crystal structure of NikA in complex with reduced Fe-L2 (N-(2-hydroxy-3-methoxybenzyl)-N'-(2-thiomethylbenzyl)- N,N'-ethylenediamine diacetic acid)
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0015675 | biological_process | nickel cation transport |
A | 0015833 | biological_process | peptide transport |
A | 0016020 | cellular_component | membrane |
A | 0016151 | molecular_function | nickel cation binding |
A | 0020037 | molecular_function | heme binding |
A | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
A | 0042597 | cellular_component | periplasmic space |
A | 0043190 | cellular_component | ATP-binding cassette (ABC) transporter complex |
A | 0046914 | molecular_function | transition metal ion binding |
A | 0050919 | biological_process | negative chemotaxis |
A | 0051540 | molecular_function | metal cluster binding |
A | 0055052 | cellular_component | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing |
A | 0055085 | biological_process | transmembrane transport |
A | 0098716 | biological_process | nickel cation import across plasma membrane |
A | 1904680 | molecular_function | peptide transmembrane transporter activity |
B | 0005515 | molecular_function | protein binding |
B | 0015675 | biological_process | nickel cation transport |
B | 0015833 | biological_process | peptide transport |
B | 0016020 | cellular_component | membrane |
B | 0016151 | molecular_function | nickel cation binding |
B | 0020037 | molecular_function | heme binding |
B | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
B | 0042597 | cellular_component | periplasmic space |
B | 0043190 | cellular_component | ATP-binding cassette (ABC) transporter complex |
B | 0046914 | molecular_function | transition metal ion binding |
B | 0050919 | biological_process | negative chemotaxis |
B | 0051540 | molecular_function | metal cluster binding |
B | 0055052 | cellular_component | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing |
B | 0055085 | biological_process | transmembrane transport |
B | 0098716 | biological_process | nickel cation import across plasma membrane |
B | 1904680 | molecular_function | peptide transmembrane transporter activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 1 |
Details | binding site for residue FE A 601 |
Chain | Residue |
A | 9YH602 |
site_id | AC2 |
Number of Residues | 10 |
Details | binding site for residue 9YH A 602 |
Chain | Residue |
A | GOL618 |
A | HOH814 |
A | TYR22 |
A | THR23 |
A | MET27 |
A | ARG97 |
A | TRP100 |
A | ARG137 |
A | TRP398 |
A | FE601 |
site_id | AC3 |
Number of Residues | 7 |
Details | binding site for residue ACT A 603 |
Chain | Residue |
A | LEU167 |
A | GLN168 |
A | HOH710 |
B | VAL207 |
B | ALA208 |
B | THR211 |
B | ASP213 |
site_id | AC4 |
Number of Residues | 10 |
Details | binding site for residue GOL A 604 |
Chain | Residue |
A | VAL273 |
A | ASN274 |
A | LYS275 |
A | LYS276 |
A | ASP291 |
A | SER308 |
A | GLN309 |
A | TYR310 |
A | HOH702 |
A | HOH721 |
site_id | AC5 |
Number of Residues | 3 |
Details | binding site for residue ACT A 605 |
Chain | Residue |
A | SER53 |
A | TRP54 |
A | HOH1034 |
site_id | AC6 |
Number of Residues | 8 |
Details | binding site for residue GOL A 606 |
Chain | Residue |
A | ASN270 |
A | LYS306 |
A | SER308 |
A | HIS459 |
A | TYR464 |
A | HOH729 |
A | HOH754 |
A | HOH791 |
site_id | AC7 |
Number of Residues | 3 |
Details | binding site for residue ACT A 607 |
Chain | Residue |
A | LYS335 |
A | HOH883 |
B | ARG341 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue ACT A 608 |
Chain | Residue |
A | LEU430 |
A | GLU434 |
A | GLU437 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue ACT A 609 |
Chain | Residue |
A | GLN361 |
A | SER372 |
A | LEU373 |
A | HOH943 |
B | HOH1114 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 610 |
Chain | Residue |
A | ALA440 |
A | THR441 |
A | HIS442 |
A | ASP443 |
A | HOH723 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue ACT A 611 |
Chain | Residue |
A | PHE147 |
A | LYS148 |
A | ASN149 |
A | LYS157 |
A | HOH816 |
A | HOH933 |
site_id | AD3 |
Number of Residues | 2 |
Details | binding site for residue CL A 612 |
Chain | Residue |
A | LEU430 |
A | LYS433 |
site_id | AD4 |
Number of Residues | 5 |
Details | binding site for residue CL A 613 |
Chain | Residue |
A | GLN234 |
A | ARG386 |
A | SER415 |
A | HOH974 |
B | LYS306 |
site_id | AD5 |
Number of Residues | 5 |
Details | binding site for residue ACT A 614 |
Chain | Residue |
A | ARG68 |
A | ASP69 |
A | ASP70 |
A | HOH761 |
A | HOH985 |
site_id | AD6 |
Number of Residues | 3 |
Details | binding site for residue ACT A 615 |
Chain | Residue |
A | ASN261 |
A | LEU263 |
A | HOH982 |
site_id | AD7 |
Number of Residues | 5 |
Details | binding site for residue ACT A 616 |
Chain | Residue |
A | ASN235 |
A | ALA237 |
A | PHE419 |
A | GLN423 |
A | HOH758 |
site_id | AD8 |
Number of Residues | 8 |
Details | binding site for residue SO4 A 617 |
Chain | Residue |
A | GLU343 |
A | ARG384 |
A | HOH709 |
A | HOH715 |
A | HOH771 |
A | HOH787 |
B | LEU430 |
B | ARG457 |
site_id | AD9 |
Number of Residues | 7 |
Details | binding site for residue GOL A 618 |
Chain | Residue |
A | ASN220 |
A | GLU247 |
A | THR490 |
A | 9YH602 |
A | GOL619 |
A | HOH748 |
A | HOH936 |
site_id | AE1 |
Number of Residues | 8 |
Details | binding site for residue GOL A 619 |
Chain | Residue |
A | GLY222 |
A | LEU223 |
A | GOL618 |
A | HOH760 |
A | HOH864 |
A | PRO11 |
A | GLY219 |
A | ASN220 |
site_id | AE2 |
Number of Residues | 8 |
Details | binding site for residue GOL A 620 |
Chain | Residue |
A | GLU102 |
A | ASN105 |
A | LYS123 |
A | ASP227 |
A | THR228 |
A | ARG231 |
A | HOH712 |
A | HOH1006 |
site_id | AE3 |
Number of Residues | 3 |
Details | binding site for residue CL A 621 |
Chain | Residue |
A | THR23 |
A | GLN26 |
A | HOH1185 |
site_id | AE4 |
Number of Residues | 1 |
Details | binding site for residue FE B 601 |
Chain | Residue |
B | 9YH602 |
site_id | AE5 |
Number of Residues | 12 |
Details | binding site for residue 9YH B 602 |
Chain | Residue |
B | TYR22 |
B | MET27 |
B | ARG97 |
B | TRP100 |
B | ARG137 |
B | TRP398 |
B | HIS416 |
B | THR490 |
B | FE601 |
B | HOH716 |
B | HOH758 |
B | HOH780 |
site_id | AE6 |
Number of Residues | 9 |
Details | binding site for residue GOL B 603 |
Chain | Residue |
A | ASP43 |
A | GLY44 |
A | PRO299 |
A | HOH1027 |
B | ASN482 |
B | ILE483 |
B | PRO484 |
B | TYR485 |
B | HOH712 |
site_id | AE7 |
Number of Residues | 2 |
Details | binding site for residue CL B 604 |
Chain | Residue |
B | ARG365 |
B | HOH706 |
site_id | AE8 |
Number of Residues | 9 |
Details | binding site for residue GOL B 605 |
Chain | Residue |
B | TRP10 |
B | PRO11 |
B | GLY219 |
B | ASN220 |
B | GLY222 |
B | LEU223 |
B | GOL606 |
B | HOH760 |
B | HOH790 |
site_id | AE9 |
Number of Residues | 8 |
Details | binding site for residue GOL B 606 |
Chain | Residue |
B | ASN220 |
B | GLU247 |
B | ARG396 |
B | MET472 |
B | THR490 |
B | GOL605 |
B | HOH763 |
B | HOH1027 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue ACT B 607 |
Chain | Residue |
B | ASN183 |
B | LYS433 |
B | HOH771 |
B | HOH977 |
B | HOH1008 |
Functional Information from PROSITE/UniProt
site_id | PS01040 |
Number of Residues | 23 |
Details | SBP_BACTERIAL_5 Bacterial extracellular solute-binding proteins, family 5 signature. AkswthseDgkTWtFtLRDDVKF |
Chain | Residue | Details |
A | ALA51-PHE73 |