Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0006260 | biological_process | DNA replication |
A | 0006261 | biological_process | DNA-templated DNA replication |
A | 0006287 | biological_process | base-excision repair, gap-filling |
A | 0006297 | biological_process | nucleotide-excision repair, DNA gap filling |
A | 0008296 | molecular_function | 3'-5'-DNA exonuclease activity |
A | 0009432 | biological_process | SOS response |
A | 0045004 | biological_process | DNA replication proofreading |
A | 0071897 | biological_process | DNA biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue MN A 801 |
Chain | Residue |
A | ASP404 |
A | PHE405 |
A | ASP542 |
A | DTP806 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue GOL A 802 |
Chain | Residue |
P | DC12 |
A | TYR402 |
A | HIS545 |
A | TYR583 |
A | TYR594 |
A | ARG606 |
site_id | AC3 |
Number of Residues | 7 |
Details | binding site for residue MG A 803 |
Chain | Residue |
A | TYR402 |
A | ASP404 |
A | ASP542 |
A | DTP806 |
A | HOH1001 |
A | HOH1031 |
P | DC12 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue PGE A 804 |
Chain | Residue |
A | TYR273 |
A | HOH1038 |
site_id | AC5 |
Number of Residues | 1 |
Details | binding site for residue PGE A 805 |
site_id | AC6 |
Number of Residues | 19 |
Details | binding site for residue DTP A 806 |
Chain | Residue |
A | ASP404 |
A | PHE405 |
A | SER407 |
A | LEU408 |
A | TYR409 |
A | ARG460 |
A | LYS487 |
A | ASN491 |
A | ASP542 |
A | MN801 |
A | MG803 |
A | HOH922 |
A | HOH935 |
A | HOH947 |
A | HOH975 |
A | HOH986 |
P | DC12 |
T | DT4 |
T | DG5 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue MG T 101 |
Functional Information from PROSITE/UniProt
site_id | PS00116 |
Number of Residues | 9 |
Details | DNA_POLYMERASE_B DNA polymerase family B signature. YADTDGLHA |
Chain | Residue | Details |
A | TYR538-ALA546 | |