Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NO1

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI XZ407 (compound 5g)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0015074biological_processDNA integration
B0003676molecular_functionnucleic acid binding
B0015074biological_processDNA integration
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MG A 401
ChainResidue
AASP128
AGLU221
AXZ4403
DHOH201

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 402
ChainResidue
AASP128
AASP185
AXZ4403
AHOH515
AHOH536

site_idAC3
Number of Residues16
Detailsbinding site for residue XZ4 A 403
ChainResidue
AASP128
AASP185
ATYR212
APRO214
AGLN215
AGLU221
AMG401
AMG402
ASO4408
AMES415
AHOH515
AHOH536
CDG4
DDC16
DDA17
DHOH201

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 404
ChainResidue
AHIS62
AHIS66
ACYS96
ACYS99

site_idAC5
Number of Residues5
Detailsbinding site for residue SO4 A 405
ChainResidue
AARG114
ATYR303
APRO305
CDC6
CGOL101

site_idAC6
Number of Residues3
Detailsbinding site for residue SO4 A 406
ChainResidue
APRO115
AASP116
CDT3

site_idAC7
Number of Residues4
Detailsbinding site for residue SO4 A 407
ChainResidue
ASER136
AGLN137
ALYS241
AHOH501

site_idAC8
Number of Residues8
Detailsbinding site for residue SO4 A 408
ChainResidue
AASP185
AGLN186
AGLY187
APRO211
ATYR212
AXZ4403
AMES415
AHOH527

site_idAC9
Number of Residues5
Detailsbinding site for residue SO4 A 409
ChainResidue
ALYS228
ASER332
ALEU333
AARG336
AHOH504

site_idAD1
Number of Residues4
Detailsbinding site for residue SO4 A 410
ChainResidue
AHIS338
ALYS339
AHIS357
AHOH522

site_idAD2
Number of Residues5
Detailsbinding site for residue GOL A 411
ChainResidue
AGLN60
ALEU79
ATYR80
APRO277
APHE278

site_idAD3
Number of Residues3
Detailsbinding site for residue GOL A 412
ChainResidue
ASER162
ATHR163
ASER164

site_idAD4
Number of Residues5
Detailsbinding site for residue GOL A 413
ChainResidue
ALEU292
AGLN296
BTYR263
BGLN267
BASP273

site_idAD5
Number of Residues5
Detailsbinding site for residue GOL A 414
ChainResidue
AGLY18
AHIS19
ATYR20
ALYS26
BTHR210

site_idAD6
Number of Residues7
Detailsbinding site for residue MES A 415
ChainResidue
AGLN186
ATYR212
AARG329
AXZ4403
ASO4408
AHEZ416
DDA17

site_idAD7
Number of Residues7
Detailsbinding site for residue HEZ A 416
ChainResidue
ATYR212
AVAL327
AALA328
AHIS338
AARG362
AMES415
AHOH506

site_idAD8
Number of Residues3
Detailsbinding site for residue MG B 401
ChainResidue
BASP128
BASP185
CDA19

site_idAD9
Number of Residues5
Detailsbinding site for residue SO4 B 402
ChainResidue
BLYS219
BARG222
BSER258
BPRO259
BVAL260

site_idAE1
Number of Residues3
Detailsbinding site for residue GOL B 403
ChainResidue
BARG222
BHOH506
BGLY218

site_idAE2
Number of Residues8
Detailsbinding site for residue GOL C 101
ChainResidue
AVAL260
ASO4405
CDC6
CDA7
CDT8
CHOH207
CHOH209
DDC11

site_idAE3
Number of Residues5
Detailsbinding site for residue SO4 D 101
ChainResidue
AARG229
AARG336
AHOH512
AHOH526
DDC16

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP123
AASP185
BASP123
BASP185

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon