5MKN
Crystal structure of SmAP (LSm) protein from Methanococcus vannielii
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003723 | molecular_function | RNA binding |
A | 0046872 | molecular_function | metal ion binding |
A | 1990904 | cellular_component | ribonucleoprotein complex |
B | 0003723 | molecular_function | RNA binding |
B | 0046872 | molecular_function | metal ion binding |
B | 1990904 | cellular_component | ribonucleoprotein complex |
C | 0003723 | molecular_function | RNA binding |
C | 0046872 | molecular_function | metal ion binding |
C | 1990904 | cellular_component | ribonucleoprotein complex |
D | 0003723 | molecular_function | RNA binding |
D | 0046872 | molecular_function | metal ion binding |
D | 1990904 | cellular_component | ribonucleoprotein complex |
E | 0003723 | molecular_function | RNA binding |
E | 0046872 | molecular_function | metal ion binding |
E | 1990904 | cellular_component | ribonucleoprotein complex |
F | 0003723 | molecular_function | RNA binding |
F | 0046872 | molecular_function | metal ion binding |
F | 1990904 | cellular_component | ribonucleoprotein complex |
G | 0003723 | molecular_function | RNA binding |
G | 0046872 | molecular_function | metal ion binding |
G | 1990904 | cellular_component | ribonucleoprotein complex |
H | 0003723 | molecular_function | RNA binding |
H | 0046872 | molecular_function | metal ion binding |
H | 1990904 | cellular_component | ribonucleoprotein complex |
I | 0003723 | molecular_function | RNA binding |
I | 0046872 | molecular_function | metal ion binding |
I | 1990904 | cellular_component | ribonucleoprotein complex |
J | 0003723 | molecular_function | RNA binding |
J | 0046872 | molecular_function | metal ion binding |
J | 1990904 | cellular_component | ribonucleoprotein complex |
K | 0003723 | molecular_function | RNA binding |
K | 0046872 | molecular_function | metal ion binding |
K | 1990904 | cellular_component | ribonucleoprotein complex |
L | 0003723 | molecular_function | RNA binding |
L | 0046872 | molecular_function | metal ion binding |
L | 1990904 | cellular_component | ribonucleoprotein complex |
M | 0003723 | molecular_function | RNA binding |
M | 0046872 | molecular_function | metal ion binding |
M | 1990904 | cellular_component | ribonucleoprotein complex |
N | 0003723 | molecular_function | RNA binding |
N | 0046872 | molecular_function | metal ion binding |
N | 1990904 | cellular_component | ribonucleoprotein complex |
O | 0003723 | molecular_function | RNA binding |
O | 0046872 | molecular_function | metal ion binding |
O | 1990904 | cellular_component | ribonucleoprotein complex |
P | 0003723 | molecular_function | RNA binding |
P | 0046872 | molecular_function | metal ion binding |
P | 1990904 | cellular_component | ribonucleoprotein complex |
Q | 0003723 | molecular_function | RNA binding |
Q | 0046872 | molecular_function | metal ion binding |
Q | 1990904 | cellular_component | ribonucleoprotein complex |
R | 0003723 | molecular_function | RNA binding |
R | 0046872 | molecular_function | metal ion binding |
R | 1990904 | cellular_component | ribonucleoprotein complex |
T | 0003723 | molecular_function | RNA binding |
T | 0046872 | molecular_function | metal ion binding |
T | 1990904 | cellular_component | ribonucleoprotein complex |
U | 0003723 | molecular_function | RNA binding |
U | 0046872 | molecular_function | metal ion binding |
U | 1990904 | cellular_component | ribonucleoprotein complex |
V | 0003723 | molecular_function | RNA binding |
V | 0046872 | molecular_function | metal ion binding |
V | 1990904 | cellular_component | ribonucleoprotein complex |
W | 0003723 | molecular_function | RNA binding |
W | 0046872 | molecular_function | metal ion binding |
W | 1990904 | cellular_component | ribonucleoprotein complex |
X | 0003723 | molecular_function | RNA binding |
X | 0046872 | molecular_function | metal ion binding |
X | 1990904 | cellular_component | ribonucleoprotein complex |
Y | 0003723 | molecular_function | RNA binding |
Y | 0046872 | molecular_function | metal ion binding |
Y | 1990904 | cellular_component | ribonucleoprotein complex |
Z | 0003723 | molecular_function | RNA binding |
Z | 0046872 | molecular_function | metal ion binding |
Z | 1990904 | cellular_component | ribonucleoprotein complex |
a | 0003723 | molecular_function | RNA binding |
a | 0046872 | molecular_function | metal ion binding |
a | 1990904 | cellular_component | ribonucleoprotein complex |
b | 0003723 | molecular_function | RNA binding |
b | 0046872 | molecular_function | metal ion binding |
b | 1990904 | cellular_component | ribonucleoprotein complex |
d | 0003723 | molecular_function | RNA binding |
d | 0046872 | molecular_function | metal ion binding |
d | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | binding site for residue U5P A 101 |
Chain | Residue |
A | HIS39 |
A | ASN41 |
A | ARG63 |
A | ASP65 |
B | ARG63 |
B | U5P101 |
G | LEU38 |
G | MET40 |
G | U5P101 |
site_id | AC2 |
Number of Residues | 9 |
Details | binding site for residue U5P B 101 |
Chain | Residue |
A | LEU38 |
A | MET40 |
A | U5P101 |
B | HIS39 |
B | ASN41 |
B | ARG63 |
B | ASP65 |
C | ARG63 |
C | U5P101 |
site_id | AC3 |
Number of Residues | 3 |
Details | binding site for residue PG4 B 102 |
Chain | Residue |
A | LEU8 |
B | ASP37 |
T | ASP37 |
site_id | AC4 |
Number of Residues | 9 |
Details | binding site for residue U5P C 101 |
Chain | Residue |
B | LEU38 |
B | MET40 |
B | U5P101 |
C | HIS39 |
C | ASN41 |
C | ARG63 |
C | ASP65 |
D | ARG63 |
D | U5P101 |
site_id | AC5 |
Number of Residues | 8 |
Details | binding site for residue U5P D 101 |
Chain | Residue |
C | LEU38 |
C | U5P101 |
D | HIS39 |
D | ASN41 |
D | ARG63 |
D | ASP65 |
E | ARG63 |
E | U5P101 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue PG4 D 102 |
Chain | Residue |
D | ASP37 |
D | HOH202 |
Q | ARG6 |
R | ASP37 |
site_id | AC7 |
Number of Residues | 10 |
Details | binding site for residue U5P E 101 |
Chain | Residue |
D | LEU38 |
D | MET40 |
D | U5P101 |
E | HIS39 |
E | ASN41 |
E | ARG63 |
E | GLY64 |
E | ASP65 |
F | ARG63 |
F | U5P101 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue PG4 E 102 |
Chain | Residue |
E | ASP37 |
E | HOH202 |
P | ARG6 |
site_id | AC9 |
Number of Residues | 10 |
Details | binding site for residue U5P F 101 |
Chain | Residue |
E | LEU38 |
E | U5P101 |
F | HIS39 |
F | ASN41 |
F | ARG63 |
F | GLY64 |
F | ASP65 |
F | HOH201 |
G | ARG63 |
G | U5P101 |
site_id | AD1 |
Number of Residues | 6 |
Details | binding site for residue U5P F 102 |
Chain | Residue |
F | ARG6 |
F | PRO7 |
F | LEU8 |
F | LEU38 |
G | ASP37 |
U | U5P102 |
site_id | AD2 |
Number of Residues | 9 |
Details | binding site for residue U5P G 101 |
Chain | Residue |
A | ARG63 |
A | U5P101 |
F | LEU38 |
F | MET40 |
F | U5P101 |
G | HIS39 |
G | ASN41 |
G | ARG63 |
G | ASP65 |
site_id | AD3 |
Number of Residues | 1 |
Details | binding site for residue PG4 G 102 |
Chain | Residue |
G | ARG6 |
site_id | AD4 |
Number of Residues | 11 |
Details | binding site for residue U5P H 101 |
Chain | Residue |
H | HIS39 |
H | ASN41 |
H | ARG63 |
H | GLY64 |
H | ASP65 |
H | HOH201 |
I | ARG63 |
I | U5P101 |
N | LEU38 |
N | MET40 |
N | U5P101 |
site_id | AD5 |
Number of Residues | 9 |
Details | binding site for residue U5P I 101 |
Chain | Residue |
J | ARG63 |
J | U5P101 |
H | LEU38 |
H | MET40 |
H | U5P101 |
I | HIS39 |
I | ASN41 |
I | ARG63 |
I | ASP65 |
site_id | AD6 |
Number of Residues | 10 |
Details | binding site for residue U5P J 101 |
Chain | Residue |
I | LEU38 |
I | MET40 |
I | U5P101 |
J | HIS39 |
J | ASN41 |
J | ARG63 |
J | GLY64 |
J | ASP65 |
K | ARG63 |
K | U5P101 |
site_id | AD7 |
Number of Residues | 5 |
Details | binding site for residue PG4 J 102 |
Chain | Residue |
J | ARG6 |
J | PRO7 |
J | LEU8 |
J | LEU38 |
K | ASP37 |
site_id | AD8 |
Number of Residues | 9 |
Details | binding site for residue U5P K 101 |
Chain | Residue |
J | LEU38 |
J | U5P101 |
K | HIS39 |
K | ASN41 |
K | ARG63 |
K | GLY64 |
K | ASP65 |
L | ARG63 |
L | U5P101 |
site_id | AD9 |
Number of Residues | 11 |
Details | binding site for residue U5P L 101 |
Chain | Residue |
K | LEU38 |
K | HIS39 |
K | MET40 |
K | U5P101 |
L | HIS39 |
L | ASN41 |
L | ARG63 |
L | GLY64 |
L | ASP65 |
M | ARG63 |
M | U5P101 |
site_id | AE1 |
Number of Residues | 10 |
Details | binding site for residue U5P M 101 |
Chain | Residue |
L | LEU38 |
L | MET40 |
L | U5P101 |
M | HIS39 |
M | ASN41 |
M | ARG63 |
M | GLY64 |
M | ASP65 |
N | ARG63 |
N | U5P101 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue PG4 M 102 |
Chain | Residue |
M | ARG6 |
M | PRO7 |
M | LEU8 |
M | LEU38 |
N | ASP37 |
site_id | AE3 |
Number of Residues | 10 |
Details | binding site for residue U5P N 101 |
Chain | Residue |
H | ARG63 |
H | U5P101 |
M | LEU38 |
M | MET40 |
M | U5P101 |
N | HIS39 |
N | ASN41 |
N | ARG63 |
N | GLY64 |
N | ASP65 |
site_id | AE4 |
Number of Residues | 9 |
Details | binding site for residue U5P O 101 |
Chain | Residue |
O | HIS39 |
O | ASN41 |
O | ARG63 |
O | ASP65 |
P | ARG63 |
P | U5P101 |
U | LEU38 |
U | MET40 |
U | U5P101 |
site_id | AE5 |
Number of Residues | 9 |
Details | binding site for residue U5P P 101 |
Chain | Residue |
O | LEU38 |
O | U5P101 |
P | HIS39 |
P | ASN41 |
P | ARG63 |
P | GLY64 |
P | ASP65 |
Q | ARG63 |
Q | U5P101 |
site_id | AE6 |
Number of Residues | 9 |
Details | binding site for residue U5P Q 101 |
Chain | Residue |
P | LEU38 |
P | MET40 |
P | U5P101 |
Q | HIS39 |
Q | ASN41 |
Q | ARG63 |
Q | ASP65 |
R | ARG63 |
R | U5P101 |
site_id | AE7 |
Number of Residues | 9 |
Details | binding site for residue U5P R 101 |
Chain | Residue |
Q | LEU38 |
Q | MET40 |
Q | U5P101 |
R | HIS39 |
R | ASN41 |
R | ARG63 |
R | ASP65 |
d | ARG63 |
d | U5P101 |
site_id | AE8 |
Number of Residues | 10 |
Details | binding site for residue U5P T 101 |
Chain | Residue |
T | HIS39 |
T | ASN41 |
T | ARG63 |
T | GLY64 |
T | ASP65 |
U | ARG63 |
U | U5P101 |
d | LEU38 |
d | MET40 |
d | U5P101 |
site_id | AE9 |
Number of Residues | 10 |
Details | binding site for residue U5P U 101 |
Chain | Residue |
O | ARG63 |
O | U5P101 |
T | LEU38 |
T | MET40 |
T | U5P101 |
U | HIS39 |
U | ASN41 |
U | ARG63 |
U | GLY64 |
U | ASP65 |
site_id | AF1 |
Number of Residues | 6 |
Details | binding site for residue U5P U 102 |
Chain | Residue |
F | U5P102 |
O | ASP37 |
U | ARG6 |
U | PRO7 |
U | LEU8 |
U | LEU38 |
site_id | AF2 |
Number of Residues | 8 |
Details | binding site for residue U5P V 101 |
Chain | Residue |
V | HIS39 |
V | ASN41 |
V | ARG63 |
V | ASP65 |
W | ARG63 |
W | U5P101 |
b | LEU38 |
b | U5P101 |
site_id | AF3 |
Number of Residues | 8 |
Details | binding site for residue U5P W 101 |
Chain | Residue |
V | LEU38 |
V | U5P101 |
W | HIS39 |
W | ASN41 |
W | ARG63 |
W | ASP65 |
X | ARG63 |
X | U5P101 |
site_id | AF4 |
Number of Residues | 1 |
Details | binding site for residue PG4 W 102 |
Chain | Residue |
W | HOH202 |
site_id | AF5 |
Number of Residues | 9 |
Details | binding site for residue U5P X 101 |
Chain | Residue |
W | LEU38 |
W | U5P101 |
X | HIS39 |
X | ASN41 |
X | ARG63 |
X | GLY64 |
X | ASP65 |
Y | ARG63 |
Y | U5P101 |
site_id | AF6 |
Number of Residues | 10 |
Details | binding site for residue U5P Y 101 |
Chain | Residue |
X | LEU38 |
X | MET40 |
X | U5P101 |
Y | HIS39 |
Y | ASN41 |
Y | ARG63 |
Y | GLY64 |
Y | ASP65 |
Z | ARG63 |
Z | U5P101 |
site_id | AF7 |
Number of Residues | 9 |
Details | binding site for residue U5P Z 101 |
Chain | Residue |
Y | LEU38 |
Y | U5P101 |
Z | HIS39 |
Z | ASN41 |
Z | ARG63 |
Z | GLY64 |
Z | ASP65 |
a | ARG63 |
a | U5P101 |
site_id | AF8 |
Number of Residues | 2 |
Details | binding site for residue PG4 Z 102 |
Chain | Residue |
Z | ASP37 |
Z | HOH202 |
site_id | AF9 |
Number of Residues | 6 |
Details | binding site for residue U5P a 101 |
Chain | Residue |
Z | LEU38 |
Z | U5P101 |
a | HIS39 |
a | ASN41 |
a | ARG63 |
a | ASP65 |
site_id | AG1 |
Number of Residues | 9 |
Details | binding site for residue U5P b 101 |
Chain | Residue |
V | ARG63 |
V | U5P101 |
a | LEU38 |
a | MET40 |
b | HIS39 |
b | ASN41 |
b | ARG63 |
b | GLY64 |
b | ASP65 |
site_id | AG2 |
Number of Residues | 10 |
Details | binding site for residue U5P d 101 |
Chain | Residue |
R | LEU38 |
R | MET40 |
R | U5P101 |
T | ARG63 |
T | U5P101 |
d | HIS39 |
d | ASN41 |
d | ARG63 |
d | GLY64 |
d | ASP65 |
site_id | AG3 |
Number of Residues | 2 |
Details | binding site for residue PG4 d 102 |
Chain | Residue |
d | ASP37 |
d | HOH201 |