5L6I
Uba1 in complex with Ub-MLN4924 covalent adduct
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004839 | molecular_function | ubiquitin activating enzyme activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
A | 0006974 | biological_process | DNA damage response |
A | 0008641 | molecular_function | ubiquitin-like modifier activating enzyme activity |
A | 0016567 | biological_process | protein ubiquitination |
A | 0016874 | molecular_function | ligase activity |
A | 0036211 | biological_process | protein modification process |
C | 0004839 | molecular_function | ubiquitin activating enzyme activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
C | 0006974 | biological_process | DNA damage response |
C | 0008641 | molecular_function | ubiquitin-like modifier activating enzyme activity |
C | 0016567 | biological_process | protein ubiquitination |
C | 0016874 | molecular_function | ligase activity |
C | 0036211 | biological_process | protein modification process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | binding site for residue SO4 A 1101 |
Chain | Residue |
A | ARG21 |
A | ASN478 |
A | ARG481 |
A | HOH1216 |
A | HOH1225 |
A | HOH1252 |
A | HOH1277 |
B | B39101 |
site_id | AC2 |
Number of Residues | 1 |
Details | binding site for residue CL A 1102 |
Chain | Residue |
A | ARG96 |
site_id | AC3 |
Number of Residues | 1 |
Details | binding site for residue CL A 1105 |
Chain | Residue |
A | HOH1377 |
site_id | AC4 |
Number of Residues | 9 |
Details | binding site for residue GOL A 1109 |
Chain | Residue |
A | ASP282 |
A | LYS285 |
A | PHE391 |
A | ASP392 |
A | SER393 |
A | GLU395 |
A | LYS895 |
A | HOH1229 |
A | HOH1288 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue GOL A 1110 |
Chain | Residue |
A | TYR740 |
A | ASN828 |
A | HIS830 |
A | HOH1358 |
site_id | AC6 |
Number of Residues | 7 |
Details | binding site for residue GOL A 1111 |
Chain | Residue |
A | SER153 |
A | GLU155 |
A | ASN162 |
A | HIS293 |
A | PHE296 |
A | TYR390 |
A | HOH1213 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue GOL A 1112 |
Chain | Residue |
A | ASN344 |
A | HOH1357 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue GOL A 1113 |
Chain | Residue |
A | LEU134 |
A | GLU135 |
A | HOH1204 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue GOL A 1114 |
Chain | Residue |
A | LEU114 |
A | VAL117 |
A | ASP136 |
A | LYS139 |
site_id | AD1 |
Number of Residues | 3 |
Details | binding site for residue GOL A 1115 |
Chain | Residue |
A | THR172 |
A | CYS378 |
A | SER379 |
site_id | AD2 |
Number of Residues | 2 |
Details | binding site for residue GOL A 1116 |
Chain | Residue |
A | ASP851 |
A | ARG852 |
site_id | AD3 |
Number of Residues | 3 |
Details | binding site for residue GOL A 1117 |
Chain | Residue |
A | ARG554 |
A | VAL557 |
A | GLU1004 |
site_id | AD4 |
Number of Residues | 18 |
Details | binding site for residue B39 B 101 |
Chain | Residue |
A | GLY441 |
A | GLY443 |
A | ALA444 |
A | ASP470 |
A | ASN471 |
A | ASP472 |
A | ARG481 |
A | GLN482 |
A | LYS494 |
A | LYS519 |
A | VAL520 |
A | ALA542 |
A | ASP544 |
A | ALA548 |
A | TYR551 |
A | SO41101 |
A | HOH1252 |
B | GLY76 |
site_id | AD5 |
Number of Residues | 2 |
Details | binding site for residue CL B 102 |
Chain | Residue |
A | HOH1375 |
B | ARG74 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue SO4 C 1101 |
Chain | Residue |
C | ARG21 |
C | ASN478 |
C | ARG481 |
C | HOH1205 |
C | HOH1252 |
D | B39101 |
site_id | AD7 |
Number of Residues | 2 |
Details | binding site for residue CL C 1103 |
Chain | Residue |
C | ARG861 |
D | ARG74 |
site_id | AD8 |
Number of Residues | 3 |
Details | binding site for residue CL C 1105 |
Chain | Residue |
C | ARG202 |
E | ARG42 |
E | ARG72 |
site_id | AD9 |
Number of Residues | 3 |
Details | binding site for residue CL C 1106 |
Chain | Residue |
C | ARG288 |
C | GOL1114 |
C | HOH1384 |
site_id | AE1 |
Number of Residues | 8 |
Details | binding site for residue GOL C 1110 |
Chain | Residue |
C | ASP282 |
C | LYS285 |
C | ASP392 |
C | SER393 |
C | GLU395 |
C | HOH1238 |
C | HOH1243 |
C | HOH1285 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue GOL C 1111 |
Chain | Residue |
C | ASP851 |
C | ARG852 |
C | GLN853 |
site_id | AE3 |
Number of Residues | 6 |
Details | binding site for residue GOL C 1112 |
Chain | Residue |
C | SER153 |
C | GLU155 |
C | ASN162 |
C | PHE296 |
C | GLN297 |
C | HIS300 |
site_id | AE4 |
Number of Residues | 1 |
Details | binding site for residue GOL C 1113 |
Chain | Residue |
C | GLU180 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue GOL C 1114 |
Chain | Residue |
C | ARG288 |
C | ASN344 |
C | ASP346 |
C | CL1106 |
site_id | AE6 |
Number of Residues | 5 |
Details | binding site for residue GOL C 1115 |
Chain | Residue |
C | LYS33 |
C | ARG150 |
C | THR172 |
C | SER379 |
C | GLY380 |
site_id | AE7 |
Number of Residues | 2 |
Details | binding site for residue GOL C 1116 |
Chain | Residue |
C | ASN828 |
C | HIS830 |
site_id | AE8 |
Number of Residues | 20 |
Details | binding site for Di-peptide B39 D 101 and GLY D 76 |
Chain | Residue |
C | GLY441 |
C | GLY443 |
C | ALA444 |
C | ILE445 |
C | ASP470 |
C | ASN471 |
C | ASP472 |
C | ARG481 |
C | GLN482 |
C | LYS494 |
C | LYS519 |
C | VAL520 |
C | ALA542 |
C | LEU543 |
C | ASP544 |
C | ALA548 |
C | SO41101 |
C | HOH1289 |
D | GLY75 |
D | HOH202 |
site_id | AE9 |
Number of Residues | 15 |
Details | binding site for Di-peptide GLY E 76 and CYS C 600 |
Chain | Residue |
C | LEU73 |
C | ALA74 |
C | ASP75 |
C | SER77 |
C | THR78 |
C | LEU82 |
C | ARG416 |
C | PRO598 |
C | LEU599 |
C | THR601 |
C | LEU602 |
C | ARG603 |
C | SER604 |
C | PHE605 |
C | VAL780 |
Functional Information from PROSITE/UniProt
site_id | PS00536 |
Number of Residues | 9 |
Details | UBIQUITIN_ACTIVAT_1 Ubiquitin-activating enzyme signature 1. KACSGKFtP |
Chain | Residue | Details |
A | LYS376-PRO384 |
site_id | PS00865 |
Number of Residues | 9 |
Details | UBIQUITIN_ACTIVAT_2 Ubiquitin-activating enzyme active site. PLCTLRsFP |
Chain | Residue | Details |
A | PRO598-PRO606 |
site_id | PS00299 |
Number of Residues | 26 |
Details | UBIQUITIN_1 Ubiquitin domain signature. KskIqDkegIPpdqQrLIFaGkqleD |
Chain | Residue | Details |
B | LYS27-ASP52 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 21 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62979 |
Chain | Residue | Details |
B | LYS29 | |
B | LYS48 | |
B | LYS63 | |
D | LYS6 | |
D | LYS11 | |
D | LYS27 | |
D | LYS29 | |
D | LYS33 | |
D | LYS48 | |
D | LYS63 | |
E | LYS6 | |
E | LYS11 | |
E | LYS27 | |
E | LYS29 | |
E | LYS33 | |
E | LYS48 | |
E | LYS63 | |
B | LYS33 | |
B | LYS6 | |
B | LYS11 | |
B | LYS27 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | CROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|PROSITE-ProRule:PRU00214 |
Chain | Residue | Details |
D | GLY76 | |
E | GLY76 | |
A | ARG481 | |
A | ASP544 | |
C | ASP470 | |
C | ARG481 | |
C | LYS494 | |
C | ASP544 | |
A | ALA444 | |
B | GLY76 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N-acetylserine => ECO:0007744|PubMed:22814378 |
Chain | Residue | Details |
A | SER2 | |
C | SER2 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:17287358 |
Chain | Residue | Details |
A | SER265 | |
C | SER265 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956 |
Chain | Residue | Details |
A | SER914 | |
C | SER914 |
site_id | SWS_FT_FI6 |
Number of Residues | 6 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047 |
Chain | Residue | Details |
A | LYS608 | |
C | LYS595 | |
C | LYS608 | |
A | LYS595 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 8 |
Details | M-CSA 307 |
Chain | Residue | Details |
A | ARG21 | electrostatic stabiliser, hydrogen bond donor, steric role |
A | ARG481 | electrostatic stabiliser, hydrogen bond donor, steric role |
A | ASP544 | steric role |
A | CYS600 | activator, covalently attached, hydrogen bond donor, nucleophile, proton donor |
A | THR601 | hydrogen bond acceptor, hydrogen bond donor, increase acidity, increase nucleophilicity, proton acceptor, proton donor, proton relay |
A | ARG603 | electrostatic stabiliser, hydrogen bond donor |
A | ASN781 | electrostatic stabiliser, hydrogen bond donor |
A | ASP782 | electrostatic stabiliser, hydrogen bond donor |
site_id | MCSA2 |
Number of Residues | 5 |
Details | M-CSA 939 |
Chain | Residue | Details |
A | CYS600 | nucleofuge |
A | THR601 | modifies pKa |
A | ARG603 | electrostatic stabiliser |
A | ASN781 | electrostatic stabiliser |
A | ASP782 | electrostatic stabiliser |
site_id | MCSA3 |
Number of Residues | 8 |
Details | M-CSA 307 |
Chain | Residue | Details |
C | ARG21 | electrostatic stabiliser, hydrogen bond donor, steric role |
C | ARG481 | electrostatic stabiliser, hydrogen bond donor, steric role |
C | ASP544 | steric role |
C | CYS600 | activator, covalently attached, hydrogen bond donor, nucleophile, proton donor |
C | THR601 | hydrogen bond acceptor, hydrogen bond donor, increase acidity, increase nucleophilicity, proton acceptor, proton donor, proton relay |
C | ARG603 | electrostatic stabiliser, hydrogen bond donor |
C | ASN781 | electrostatic stabiliser, hydrogen bond donor |
C | ASP782 | electrostatic stabiliser, hydrogen bond donor |
site_id | MCSA4 |
Number of Residues | 5 |
Details | M-CSA 939 |
Chain | Residue | Details |
C | CYS600 | nucleofuge |
C | THR601 | modifies pKa |
C | ARG603 | electrostatic stabiliser |
C | ASN781 | electrostatic stabiliser |
C | ASP782 | electrostatic stabiliser |