5L3S
Structure of the GTPase heterodimer of crenarchaeal SRP54 and FtsY
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003924 | molecular_function | GTPase activity |
A | 0005525 | molecular_function | GTP binding |
A | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
A | 0016887 | molecular_function | ATP hydrolysis activity |
A | 0048500 | cellular_component | signal recognition particle |
B | 0005525 | molecular_function | GTP binding |
B | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
B | 0016887 | molecular_function | ATP hydrolysis activity |
C | 0003924 | molecular_function | GTPase activity |
C | 0005525 | molecular_function | GTP binding |
C | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
C | 0016887 | molecular_function | ATP hydrolysis activity |
C | 0048500 | cellular_component | signal recognition particle |
D | 0005525 | molecular_function | GTP binding |
D | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
D | 0016887 | molecular_function | ATP hydrolysis activity |
E | 0003924 | molecular_function | GTPase activity |
E | 0005525 | molecular_function | GTP binding |
E | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
E | 0016887 | molecular_function | ATP hydrolysis activity |
E | 0048500 | cellular_component | signal recognition particle |
F | 0005525 | molecular_function | GTP binding |
F | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
F | 0016887 | molecular_function | ATP hydrolysis activity |
G | 0003924 | molecular_function | GTPase activity |
G | 0005525 | molecular_function | GTP binding |
G | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
G | 0016887 | molecular_function | ATP hydrolysis activity |
G | 0048500 | cellular_component | signal recognition particle |
H | 0005525 | molecular_function | GTP binding |
H | 0006614 | biological_process | SRP-dependent cotranslational protein targeting to membrane |
H | 0016887 | molecular_function | ATP hydrolysis activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 28 |
Details | binding site for residue GNP A 301 |
Chain | Residue |
A | GLN105 |
A | GLN142 |
A | GLY188 |
A | LYS246 |
A | ASP248 |
A | GLY271 |
A | THR272 |
A | GLY273 |
A | GLU274 |
A | MG302 |
A | HOH429 |
A | GLY106 |
A | HOH439 |
A | HOH443 |
A | HOH453 |
A | HOH472 |
A | HOH477 |
A | HOH489 |
B | ASN182 |
B | ARG213 |
B | GNP401 |
A | SER107 |
A | GLY108 |
A | LYS109 |
A | THR110 |
A | THR111 |
A | LYS115 |
A | ARG136 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue MG A 302 |
Chain | Residue |
A | THR110 |
A | GNP301 |
A | HOH429 |
A | HOH439 |
A | HOH472 |
site_id | AC3 |
Number of Residues | 12 |
Details | binding site for residue G A 303 |
Chain | Residue |
A | VAL134 |
A | TYR135 |
A | ARG136 |
A | PRO137 |
A | ALA138 |
A | ALA139 |
A | TYR140 |
A | ASP141 |
A | PRO158 |
A | GLN161 |
A | HOH408 |
B | TYR222 |
site_id | AC4 |
Number of Residues | 2 |
Details | binding site for residue GOL A 304 |
Chain | Residue |
A | ASN40 |
A | SER46 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue GOL A 305 |
Chain | Residue |
A | ILE270 |
A | ASN283 |
A | ARG286 |
A | ARG290 |
A | HOH403 |
A | HOH441 |
site_id | AC6 |
Number of Residues | 7 |
Details | binding site for residue GOL A 306 |
Chain | Residue |
A | LEU146 |
A | GLN149 |
A | ILE276 |
A | HOH402 |
B | PHE212 |
B | ALA214 |
B | HOH637 |
site_id | AC7 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 307 |
Chain | Residue |
A | TYR192 |
A | GLY193 |
A | ARG232 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue SO4 A 308 |
Chain | Residue |
A | TYR192 |
A | LYS225 |
A | ASP228 |
A | ARG232 |
A | HOH450 |
site_id | AC9 |
Number of Residues | 7 |
Details | binding site for residue SO4 A 309 |
Chain | Residue |
A | TYR140 |
A | ASP141 |
A | PRO158 |
A | HOH408 |
G | TYR140 |
G | ASP141 |
G | HOH433 |
site_id | AD1 |
Number of Residues | 30 |
Details | binding site for residue GNP B 401 |
Chain | Residue |
B | HOH527 |
B | HOH532 |
B | HOH545 |
B | HOH547 |
B | HOH553 |
B | HOH555 |
A | GLN105 |
A | ARG136 |
A | HIS190 |
A | GLU195 |
A | GNP301 |
A | HOH489 |
B | ASN182 |
B | GLY183 |
B | VAL184 |
B | GLY185 |
B | LYS186 |
B | THR187 |
B | THR188 |
B | LYS192 |
B | ARG213 |
B | GLN219 |
B | GLY265 |
B | LYS321 |
B | ASP323 |
B | GLY346 |
B | VAL347 |
B | GLY348 |
B | GLN349 |
B | MG402 |
site_id | AD2 |
Number of Residues | 5 |
Details | binding site for residue MG B 402 |
Chain | Residue |
B | THR187 |
B | GNP401 |
B | HOH527 |
B | HOH532 |
B | HOH547 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue GOL B 403 |
Chain | Residue |
A | TYR135 |
B | ASN350 |
B | TYR351 |
B | HOH550 |
site_id | AD4 |
Number of Residues | 8 |
Details | binding site for residue GOL B 404 |
Chain | Residue |
A | HOH419 |
B | THR211 |
B | PHE212 |
B | ARG213 |
B | ALA215 |
B | ALA216 |
B | GLN217 |
B | GLU218 |
site_id | AD5 |
Number of Residues | 9 |
Details | binding site for residue GOL B 405 |
Chain | Residue |
B | LYS172 |
B | ASN201 |
B | SER203 |
B | ASP257 |
B | HOH522 |
B | HOH620 |
C | PRO92 |
C | LEU95 |
C | HOH477 |
site_id | AD6 |
Number of Residues | 4 |
Details | binding site for residue GOL B 406 |
Chain | Residue |
B | LYS278 |
B | ARG289 |
B | VAL312 |
B | SO4408 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 407 |
Chain | Residue |
B | LEU231 |
B | ILE232 |
B | ARG233 |
B | GLY234 |
site_id | AD8 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 408 |
Chain | Residue |
B | ARG282 |
B | GOL406 |
B | HOH612 |
site_id | AD9 |
Number of Residues | 27 |
Details | binding site for residue GNP C 301 |
Chain | Residue |
C | GLN105 |
C | GLY106 |
C | SER107 |
C | GLY108 |
C | LYS109 |
C | THR110 |
C | THR111 |
C | LYS115 |
C | ARG136 |
C | GLN142 |
C | GLY188 |
C | LYS246 |
C | ASP248 |
C | GLY271 |
C | THR272 |
C | GLY273 |
C | GLU274 |
C | MG302 |
C | HOH431 |
C | HOH447 |
C | HOH456 |
C | HOH473 |
C | HOH490 |
D | ASN182 |
D | ARG213 |
D | GNP401 |
D | HOH542 |
site_id | AE1 |
Number of Residues | 5 |
Details | binding site for residue MG C 302 |
Chain | Residue |
C | THR110 |
C | GNP301 |
C | HOH447 |
C | HOH452 |
C | HOH456 |
site_id | AE2 |
Number of Residues | 15 |
Details | binding site for residue G C 303 |
Chain | Residue |
C | VAL134 |
C | TYR135 |
C | ARG136 |
C | PRO137 |
C | ALA138 |
C | ALA139 |
C | TYR140 |
C | ASP141 |
C | PRO158 |
C | GLN161 |
C | HOH413 |
C | HOH459 |
C | HOH467 |
C | HOH501 |
D | TYR222 |
site_id | AE3 |
Number of Residues | 7 |
Details | binding site for residue GOL C 304 |
Chain | Residue |
C | ILE270 |
C | PHE282 |
C | ASN283 |
C | ARG286 |
C | ARG290 |
C | HOH401 |
C | HOH412 |
site_id | AE4 |
Number of Residues | 7 |
Details | binding site for residue GOL C 305 |
Chain | Residue |
C | GLN149 |
C | GLU274 |
C | LYS275 |
C | HOH411 |
D | PHE212 |
D | HOH528 |
D | HOH607 |
site_id | AE5 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 306 |
Chain | Residue |
C | THR196 |
C | ARG232 |
C | HOH417 |
site_id | AE6 |
Number of Residues | 30 |
Details | binding site for residue GNP D 401 |
Chain | Residue |
C | GLN105 |
C | ARG136 |
C | HIS190 |
C | GLU195 |
C | GNP301 |
D | ASN182 |
D | GLY183 |
D | VAL184 |
D | GLY185 |
D | LYS186 |
D | THR187 |
D | THR188 |
D | LYS192 |
D | ARG213 |
D | GLN219 |
D | GLY265 |
D | LYS321 |
D | ASP323 |
D | GLY346 |
D | VAL347 |
D | GLY348 |
D | GLN349 |
D | MG402 |
D | HOH512 |
D | HOH514 |
D | HOH516 |
D | HOH535 |
D | HOH542 |
D | HOH560 |
D | HOH580 |
site_id | AE7 |
Number of Residues | 5 |
Details | binding site for residue MG D 402 |
Chain | Residue |
D | THR187 |
D | GNP401 |
D | HOH512 |
D | HOH516 |
D | HOH580 |
site_id | AE8 |
Number of Residues | 4 |
Details | binding site for residue GOL D 403 |
Chain | Residue |
D | GLN349 |
D | ASN350 |
D | TYR351 |
D | HOH556 |
site_id | AE9 |
Number of Residues | 28 |
Details | binding site for residue GNP E 301 |
Chain | Residue |
E | GLN105 |
E | GLY106 |
E | SER107 |
E | GLY108 |
E | LYS109 |
E | THR110 |
E | THR111 |
E | LYS115 |
E | ARG136 |
E | GLN142 |
E | GLY188 |
E | LYS246 |
E | ASP248 |
E | GLY271 |
E | THR272 |
E | GLY273 |
E | GLU274 |
E | MG302 |
E | HOH420 |
E | HOH421 |
E | HOH432 |
E | HOH435 |
E | HOH444 |
E | HOH470 |
E | HOH471 |
F | ASN182 |
F | MET267 |
F | GNP401 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue MG E 302 |
Chain | Residue |
E | THR110 |
E | GNP301 |
E | HOH421 |
E | HOH432 |
E | HOH435 |
site_id | AF2 |
Number of Residues | 15 |
Details | binding site for residue G E 303 |
Chain | Residue |
E | VAL134 |
E | TYR135 |
E | ARG136 |
E | PRO137 |
E | ALA138 |
E | ALA139 |
E | TYR140 |
E | PRO158 |
E | GLN161 |
E | HOH415 |
E | HOH422 |
E | HOH476 |
E | HOH518 |
F | TYR222 |
F | LYS226 |
site_id | AF3 |
Number of Residues | 3 |
Details | binding site for residue GOL E 304 |
Chain | Residue |
E | PHE282 |
E | ASN283 |
E | ARG290 |
site_id | AF4 |
Number of Residues | 10 |
Details | binding site for residue GOL E 305 |
Chain | Residue |
E | LEU146 |
E | GLN149 |
E | GLU274 |
E | LYS275 |
E | ILE276 |
E | HOH401 |
E | HOH486 |
E | HOH500 |
F | PHE212 |
F | ALA214 |
site_id | AF5 |
Number of Residues | 5 |
Details | binding site for residue SO4 E 306 |
Chain | Residue |
E | TYR192 |
E | GLY193 |
E | ARG232 |
E | HOH418 |
F | ASP325 |
site_id | AF6 |
Number of Residues | 30 |
Details | binding site for residue GNP F 401 |
Chain | Residue |
E | GLN105 |
E | ARG136 |
E | HIS190 |
E | GLU195 |
E | GNP301 |
E | HOH470 |
F | ASN182 |
F | GLY183 |
F | VAL184 |
F | GLY185 |
F | LYS186 |
F | THR187 |
F | THR188 |
F | LYS192 |
F | ARG213 |
F | GLN219 |
F | GLY265 |
F | LYS321 |
F | ASP323 |
F | GLY346 |
F | VAL347 |
F | GLY348 |
F | GLN349 |
F | MG402 |
F | HOH522 |
F | HOH523 |
F | HOH528 |
F | HOH536 |
F | HOH551 |
F | HOH555 |
site_id | AF7 |
Number of Residues | 5 |
Details | binding site for residue MG F 402 |
Chain | Residue |
F | THR187 |
F | GNP401 |
F | HOH523 |
F | HOH528 |
F | HOH536 |
site_id | AF8 |
Number of Residues | 5 |
Details | binding site for residue GOL F 403 |
Chain | Residue |
E | TYR135 |
F | GLN349 |
F | ASN350 |
F | TYR351 |
F | HOH525 |
site_id | AF9 |
Number of Residues | 28 |
Details | binding site for residue GNP G 301 |
Chain | Residue |
G | GLN105 |
G | GLY106 |
G | SER107 |
G | GLY108 |
G | LYS109 |
G | THR110 |
G | THR111 |
G | LYS115 |
G | ARG136 |
G | GLN142 |
G | GLY188 |
G | LYS246 |
G | ASP248 |
G | GLY271 |
G | THR272 |
G | GLY273 |
G | GLU274 |
G | MG302 |
G | HOH424 |
G | HOH430 |
G | HOH440 |
G | HOH456 |
G | HOH489 |
G | HOH494 |
H | ASN182 |
H | ARG213 |
H | GNP401 |
H | HOH558 |
site_id | AG1 |
Number of Residues | 5 |
Details | binding site for residue MG G 302 |
Chain | Residue |
G | THR110 |
G | GNP301 |
G | HOH430 |
G | HOH440 |
G | HOH456 |
site_id | AG2 |
Number of Residues | 14 |
Details | binding site for residue G G 303 |
Chain | Residue |
G | VAL134 |
G | TYR135 |
G | PRO137 |
G | ALA138 |
G | ALA139 |
G | TYR140 |
G | ASP141 |
G | PRO158 |
G | GLN161 |
G | HOH423 |
G | HOH433 |
G | HOH523 |
H | TYR222 |
H | LYS226 |
site_id | AG3 |
Number of Residues | 7 |
Details | binding site for residue GOL G 304 |
Chain | Residue |
A | ASN177 |
G | TYR125 |
G | LYS126 |
G | VAL127 |
G | GLY151 |
G | VAL152 |
G | HOH410 |
site_id | AG4 |
Number of Residues | 8 |
Details | binding site for residue GOL G 305 |
Chain | Residue |
G | LEU146 |
G | GLN149 |
G | GLU274 |
G | LYS275 |
G | ILE276 |
H | PHE212 |
H | TYR236 |
H | HOH605 |
site_id | AG5 |
Number of Residues | 8 |
Details | binding site for residue GOL G 306 |
Chain | Residue |
G | MET247 |
G | PHE282 |
G | ASN283 |
G | ARG286 |
G | PHE287 |
G | ARG290 |
G | HOH403 |
G | HOH438 |
site_id | AG6 |
Number of Residues | 5 |
Details | binding site for residue SO4 G 307 |
Chain | Residue |
G | TYR192 |
G | GLY193 |
G | THR196 |
G | ARG232 |
H | ASP325 |
site_id | AG7 |
Number of Residues | 30 |
Details | binding site for residue GNP H 401 |
Chain | Residue |
G | GLN105 |
G | ARG136 |
G | HIS190 |
G | GLU195 |
G | GNP301 |
H | ASN182 |
H | GLY183 |
H | VAL184 |
H | GLY185 |
H | LYS186 |
H | THR187 |
H | THR188 |
H | LYS192 |
H | ARG213 |
H | GLN219 |
H | GLY265 |
H | LYS321 |
H | ASP323 |
H | GLY346 |
H | VAL347 |
H | GLY348 |
H | GLN349 |
H | MG402 |
H | HOH524 |
H | HOH533 |
H | HOH546 |
H | HOH547 |
H | HOH549 |
H | HOH558 |
H | HOH571 |
site_id | AG8 |
Number of Residues | 5 |
Details | binding site for residue MG H 402 |
Chain | Residue |
H | THR187 |
H | GNP401 |
H | HOH533 |
H | HOH549 |
H | HOH571 |
site_id | AG9 |
Number of Residues | 5 |
Details | binding site for residue GOL H 403 |
Chain | Residue |
H | GLN349 |
H | ASN350 |
H | TYR351 |
H | HOH506 |
H | HOH541 |
site_id | AH1 |
Number of Residues | 2 |
Details | binding site for residue GOL H 404 |
Chain | Residue |
H | ARG289 |
H | SO4405 |
site_id | AH2 |
Number of Residues | 5 |
Details | binding site for residue SO4 H 405 |
Chain | Residue |
H | LYS278 |
H | ARG282 |
H | GOL404 |
H | HOH525 |
H | HOH529 |
Functional Information from PROSITE/UniProt
site_id | PS00300 |
Number of Residues | 14 |
Details | SRP54 SRP54-type proteins GTP-binding domain signature. PVvYMGVGQnYddL |
Chain | Residue | Details |
B | PRO341-LEU354 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00920 |
Chain | Residue | Details |
B | GLY180 | |
H | GLY180 | |
H | ASP262 | |
H | THR320 | |
B | ASP262 | |
B | THR320 | |
D | GLY180 | |
D | ASP262 | |
D | THR320 | |
F | GLY180 | |
F | ASP262 | |
F | THR320 |