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5KOZ

Structure function studies of R. palustris RubisCO (K192C mutant; CABP-bound)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004497molecular_functionmonooxygenase activity
A0015977biological_processcarbon fixation
A0015979biological_processphotosynthesis
A0016829molecular_functionlyase activity
A0016984molecular_functionribulose-bisphosphate carboxylase activity
A0019253biological_processreductive pentose-phosphate cycle
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0004497molecular_functionmonooxygenase activity
B0015977biological_processcarbon fixation
B0015979biological_processphotosynthesis
B0016829molecular_functionlyase activity
B0016984molecular_functionribulose-bisphosphate carboxylase activity
B0019253biological_processreductive pentose-phosphate cycle
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0004497molecular_functionmonooxygenase activity
C0015977biological_processcarbon fixation
C0015979biological_processphotosynthesis
C0016829molecular_functionlyase activity
C0016984molecular_functionribulose-bisphosphate carboxylase activity
C0019253biological_processreductive pentose-phosphate cycle
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0004497molecular_functionmonooxygenase activity
D0015977biological_processcarbon fixation
D0015979biological_processphotosynthesis
D0016829molecular_functionlyase activity
D0016984molecular_functionribulose-bisphosphate carboxylase activity
D0019253biological_processreductive pentose-phosphate cycle
D0046872molecular_functionmetal ion binding
E0000287molecular_functionmagnesium ion binding
E0004497molecular_functionmonooxygenase activity
E0015977biological_processcarbon fixation
E0015979biological_processphotosynthesis
E0016829molecular_functionlyase activity
E0016984molecular_functionribulose-bisphosphate carboxylase activity
E0019253biological_processreductive pentose-phosphate cycle
E0046872molecular_functionmetal ion binding
F0000287molecular_functionmagnesium ion binding
F0004497molecular_functionmonooxygenase activity
F0015977biological_processcarbon fixation
F0015979biological_processphotosynthesis
F0016829molecular_functionlyase activity
F0016984molecular_functionribulose-bisphosphate carboxylase activity
F0019253biological_processreductive pentose-phosphate cycle
F0046872molecular_functionmetal ion binding
G0000287molecular_functionmagnesium ion binding
G0004497molecular_functionmonooxygenase activity
G0015977biological_processcarbon fixation
G0015979biological_processphotosynthesis
G0016829molecular_functionlyase activity
G0016984molecular_functionribulose-bisphosphate carboxylase activity
G0019253biological_processreductive pentose-phosphate cycle
G0046872molecular_functionmetal ion binding
H0000287molecular_functionmagnesium ion binding
H0004497molecular_functionmonooxygenase activity
H0015977biological_processcarbon fixation
H0015979biological_processphotosynthesis
H0016829molecular_functionlyase activity
H0016984molecular_functionribulose-bisphosphate carboxylase activity
H0019253biological_processreductive pentose-phosphate cycle
H0046872molecular_functionmetal ion binding
I0000287molecular_functionmagnesium ion binding
I0004497molecular_functionmonooxygenase activity
I0015977biological_processcarbon fixation
I0015979biological_processphotosynthesis
I0016829molecular_functionlyase activity
I0016984molecular_functionribulose-bisphosphate carboxylase activity
I0019253biological_processreductive pentose-phosphate cycle
I0046872molecular_functionmetal ion binding
J0000287molecular_functionmagnesium ion binding
J0004497molecular_functionmonooxygenase activity
J0015977biological_processcarbon fixation
J0015979biological_processphotosynthesis
J0016829molecular_functionlyase activity
J0016984molecular_functionribulose-bisphosphate carboxylase activity
J0019253biological_processreductive pentose-phosphate cycle
J0046872molecular_functionmetal ion binding
K0000287molecular_functionmagnesium ion binding
K0004497molecular_functionmonooxygenase activity
K0015977biological_processcarbon fixation
K0015979biological_processphotosynthesis
K0016829molecular_functionlyase activity
K0016984molecular_functionribulose-bisphosphate carboxylase activity
K0019253biological_processreductive pentose-phosphate cycle
K0046872molecular_functionmetal ion binding
L0000287molecular_functionmagnesium ion binding
L0004497molecular_functionmonooxygenase activity
L0015977biological_processcarbon fixation
L0015979biological_processphotosynthesis
L0016829molecular_functionlyase activity
L0016984molecular_functionribulose-bisphosphate carboxylase activity
L0019253biological_processreductive pentose-phosphate cycle
L0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues29
Detailsbinding site for residue CAP A 500
ChainResidue
AILE165
ASER369
AGLY370
AGLY371
AALA393
AGLY394
AGLY395
AMG501
ACO3502
AHOH604
AHOH640
ALYS167
AHOH646
AHOH648
AHOH680
AHOH681
AHOH693
BGLU49
BTHR54
BASN112
BHOH603
BHOH705
ALYS169
AASP194
AGLU195
AHIS288
AARG289
AHIS322
ALYS330

site_idAC2
Number of Residues7
Detailsbinding site for residue MG A 501
ChainResidue
ALYS167
ALYS169
AASP194
AGLU195
ACAP500
ACO3502
BASN112

site_idAC3
Number of Residues10
Detailsbinding site for residue CO3 A 502
ChainResidue
ACYS192
AASN193
AASP194
AGLU195
ALEU262
AHIS288
AHIS322
ACAP500
AMG501
AHOH663

site_idAC4
Number of Residues25
Detailsbinding site for residue CAP B 500
ChainResidue
AGLU49
ATHR54
AASN112
BILE165
BLYS167
BLYS169
BASP194
BGLU195
BHIS288
BARG289
BHIS292
BHIS322
BLYS330
BMET331
BSER369
BGLY370
BGLY371
BGLY394
BGLY395
BMG501
BCO3502
BHOH605
BHOH607
BHOH625
BHOH666

site_idAC5
Number of Residues5
Detailsbinding site for residue MG B 501
ChainResidue
AASN112
BASP194
BGLU195
BCAP500
BCO3502

site_idAC6
Number of Residues10
Detailsbinding site for residue CO3 B 502
ChainResidue
BILE165
BASN193
BASP194
BGLU195
BLEU262
BHIS288
BHIS322
BCAP500
BMG501
BHOH628

site_idAC7
Number of Residues29
Detailsbinding site for residue CAP C 500
ChainResidue
CGLY394
CGLY395
CMG501
CCO3502
CHOH608
CHOH629
CHOH640
CHOH645
CHOH649
CHOH666
CHOH686
CHOH701
DGLU49
DTHR54
DASN112
DHOH652
CILE165
CLYS167
CLYS169
CASP194
CGLU195
CHIS288
CARG289
CHIS322
CLYS330
CSER369
CGLY370
CGLY371
CALA393

site_idAC8
Number of Residues6
Detailsbinding site for residue MG C 501
ChainResidue
CLYS169
CASP194
CGLU195
CCAP500
CCO3502
DASN112

site_idAC9
Number of Residues11
Detailsbinding site for residue CO3 C 502
ChainResidue
CILE165
CCYS192
CASN193
CASP194
CGLU195
CLEU262
CHIS288
CHIS322
CCAP500
CMG501
CHOH638

site_idAD1
Number of Residues28
Detailsbinding site for residue CAP D 500
ChainResidue
CGLU49
CTHR54
CASN112
CHOH621
DILE165
DLYS167
DLYS169
DASP194
DGLU195
DHIS288
DARG289
DHIS322
DLYS330
DMET331
DSER369
DGLY370
DGLY371
DGLY394
DGLY395
DMG501
DCO3502
DHOH620
DHOH628
DHOH637
DHOH664
DHOH675
DHOH690
DHOH723

site_idAD2
Number of Residues5
Detailsbinding site for residue MG D 501
ChainResidue
DLYS169
DASP194
DGLU195
DCAP500
DCO3502

site_idAD3
Number of Residues10
Detailsbinding site for residue CO3 D 502
ChainResidue
DILE165
DCYS192
DASN193
DASP194
DGLU195
DLEU262
DHIS288
DCAP500
DMG501
DHOH666

site_idAD4
Number of Residues27
Detailsbinding site for residue CAP E 500
ChainResidue
EILE165
ELYS167
ELYS169
EASP194
EGLU195
EHIS288
EARG289
EHIS322
ELYS330
EMET331
ESER369
EGLY370
EGLY371
EGLY394
EGLY395
EMG501
ECO3502
EHOH612
EHOH620
EHOH625
EHOH650
EHOH662
EHOH674
EHOH684
FGLU49
FTHR54
FASN112

site_idAD5
Number of Residues5
Detailsbinding site for residue MG E 501
ChainResidue
EASP194
EGLU195
ECAP500
ECO3502
FASN112

site_idAD6
Number of Residues11
Detailsbinding site for residue CO3 E 502
ChainResidue
EILE165
ECYS192
EASN193
EASP194
EGLU195
ELEU262
EHIS288
EHIS322
ECAP500
EMG501
EHOH661

site_idAD7
Number of Residues25
Detailsbinding site for residue CAP F 500
ChainResidue
EGLU49
ETHR54
EASN112
FILE165
FLYS167
FLYS169
FASP194
FGLU195
FHIS288
FARG289
FHIS322
FLYS330
FSER369
FGLY370
FGLY371
FGLY394
FGLY395
FMG501
FCO3502
FHOH603
FHOH614
FHOH625
FHOH635
FHOH654
FHOH676

site_idAD8
Number of Residues4
Detailsbinding site for residue MG F 501
ChainResidue
FASP194
FGLU195
FCAP500
FCO3502

site_idAD9
Number of Residues10
Detailsbinding site for residue CO3 F 502
ChainResidue
FILE165
FASN193
FASP194
FGLU195
FLEU262
FHIS288
FHIS322
FCAP500
FMG501
FHOH607

site_idAE1
Number of Residues29
Detailsbinding site for residue CAP G 500
ChainResidue
GILE165
GLYS167
GLYS169
GASP194
GGLU195
GHIS288
GARG289
GHIS322
GLYS330
GSER369
GGLY370
GGLY371
GALA393
GGLY394
GGLY395
GMG501
GCO3502
GHOH602
GHOH604
GHOH610
GHOH650
GHOH660
GHOH679
GHOH681
HGLU49
HTHR54
HASN112
HHOH608
HHOH701

site_idAE2
Number of Residues6
Detailsbinding site for residue MG G 501
ChainResidue
GLYS169
GASP194
GGLU195
GCAP500
GCO3502
HASN112

site_idAE3
Number of Residues11
Detailsbinding site for residue CO3 G 502
ChainResidue
GILE165
GCYS192
GASN193
GASP194
GGLU195
GLEU262
GHIS288
GHIS322
GCAP500
GMG501
GHOH661

site_idAE4
Number of Residues28
Detailsbinding site for residue CAP H 500
ChainResidue
GGLU49
GTHR54
GASN112
GHOH618
HILE165
HLYS167
HLYS169
HASP194
HGLU195
HHIS288
HARG289
HHIS322
HLYS330
HSER369
HGLY370
HGLY371
HALA393
HGLY394
HGLY395
HMG501
HCO3502
HHOH605
HHOH607
HHOH642
HHOH645
HHOH655
HHOH657
HHOH670

site_idAE5
Number of Residues5
Detailsbinding site for residue MG H 501
ChainResidue
HLYS169
HASP194
HGLU195
HCAP500
HCO3502

site_idAE6
Number of Residues11
Detailsbinding site for residue CO3 H 502
ChainResidue
HILE165
HCYS192
HASN193
HASP194
HGLU195
HLEU262
HHIS288
HHIS322
HCAP500
HMG501
HHOH650

site_idAE7
Number of Residues26
Detailsbinding site for residue CAP I 500
ChainResidue
IILE165
ILYS167
ILYS169
IASP194
IGLU195
IHIS288
IARG289
IHIS322
ILYS330
IMET331
ISER369
IGLY370
IGLY371
IGLY394
IGLY395
IMG501
ICO3502
IHOH608
IHOH632
IHOH638
IHOH647
IHOH667
IHOH693
JTHR54
JASN112
JHOH687

site_idAE8
Number of Residues5
Detailsbinding site for residue MG I 501
ChainResidue
ILYS169
IASP194
IGLU195
ICAP500
ICO3502

site_idAE9
Number of Residues11
Detailsbinding site for residue CO3 I 502
ChainResidue
IILE165
ICYS192
IASN193
IASP194
IGLU195
ILEU262
IHIS288
IHIS322
ICAP500
IMG501
IHOH606

site_idAF1
Number of Residues27
Detailsbinding site for residue CAP J 500
ChainResidue
IGLU49
ITHR54
IASN112
IHOH665
JILE165
JLYS167
JLYS169
JASP194
JGLU195
JHIS288
JARG289
JHIS322
JLYS330
JMET331
JSER369
JGLY370
JGLY371
JALA393
JGLY394
JGLY395
JMG501
JCO3502
JHOH605
JHOH611
JHOH632
JHOH669
JHOH704

site_idAF2
Number of Residues6
Detailsbinding site for residue MG J 501
ChainResidue
IASN112
JLYS169
JASP194
JGLU195
JCAP500
JCO3502

site_idAF3
Number of Residues11
Detailsbinding site for residue CO3 J 502
ChainResidue
JILE165
JCYS192
JASN193
JASP194
JGLU195
JLEU262
JHIS288
JHIS322
JCAP500
JMG501
JHOH618

site_idAF4
Number of Residues28
Detailsbinding site for residue CAP K 500
ChainResidue
KILE165
KLYS167
KLYS169
KASP194
KGLU195
KHIS288
KARG289
KHIS322
KLYS330
KMET331
KSER369
KGLY370
KGLY371
KALA393
KGLY394
KGLY395
KMG501
KCO3502
KHOH1612
KHOH1619
KHOH1658
KHOH1671
KHOH1677
KHOH1684
LGLU49
LTHR54
LASN112
LHOH630

site_idAF5
Number of Residues5
Detailsbinding site for residue MG K 501
ChainResidue
KLYS169
KASP194
KGLU195
KCAP500
KCO3502

site_idAF6
Number of Residues10
Detailsbinding site for residue CO3 K 502
ChainResidue
KILE165
KCYS192
KASN193
KASP194
KGLU195
KHIS288
KHIS322
KCAP500
KMG501
KHOH1610

site_idAF7
Number of Residues29
Detailsbinding site for residue CAP L 500
ChainResidue
KGLU49
KTHR54
KASN112
KHOH1693
LILE165
LLYS167
LLYS169
LASP194
LGLU195
LHIS288
LARG289
LHIS322
LLYS330
LMET331
LSER369
LGLY370
LGLY371
LALA393
LGLY394
LGLY395
LMG501
LCO3502
LHOH604
LHOH605
LHOH633
LHOH648
LHOH651
LHOH660
LHOH697

site_idAF8
Number of Residues6
Detailsbinding site for residue MG L 501
ChainResidue
KASN112
LLYS169
LASP194
LGLU195
LCAP500
LCO3502

site_idAF9
Number of Residues11
Detailsbinding site for residue CO3 L 502
ChainResidue
LILE165
LCYS192
LASN193
LASP194
LGLU195
LLEU262
LHIS288
LHIS322
LCAP500
LMG501
LHOH602

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01339
ChainResidueDetails
ALYS167
AHIS288
BLYS167
BHIS288
CLYS167
CHIS288
DLYS167
DHIS288
ELYS167
EHIS288
FLYS167
FHIS288
GLYS167
GHIS288
HLYS167
HHIS288
ILYS167
IHIS288
JLYS167
JHIS288
KLYS167
KHIS288
LLYS167
LHIS288

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: in homodimeric partner => ECO:0000255|HAMAP-Rule:MF_01339
ChainResidueDetails
CASN112
DASN112
EASN112
FASN112
GASN112
KASN112
LASN112
AASN112
BASN112
HASN112
IASN112
JASN112

site_idSWS_FT_FI3
Number of Residues72
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01339
ChainResidueDetails
ELYS169
EASP194
EGLU195
EARG289
EHIS322
ESER369
FLYS169
FASP194
FGLU195
FARG289
FHIS322
FSER369
GLYS169
GASP194
GGLU195
GARG289
GHIS322
GSER369
HLYS169
HASP194
HGLU195
HARG289
HHIS322
HSER369
ILYS169
IASP194
IGLU195
IARG289
IHIS322
ISER369
JLYS169
JASP194
JGLU195
JARG289
JHIS322
JSER369
KLYS169
KASP194
KGLU195
KARG289
KHIS322
KSER369
LLYS169
LASP194
LGLU195
LARG289
LHIS322
LSER369
CLYS169
CASP194
ALYS169
AASP194
AGLU195
AARG289
AHIS322
ASER369
BLYS169
BASP194
BGLU195
BARG289
BHIS322
BSER369
CGLU195
CARG289
CHIS322
CSER369
DLYS169
DASP194
DGLU195
DARG289
DHIS322
DSER369

site_idSWS_FT_FI4
Number of Residues12
DetailsBINDING: via carbamate group => ECO:0000255|HAMAP-Rule:MF_01339
ChainResidueDetails
CCYS192
DCYS192
ECYS192
FCYS192
KCYS192
LCYS192
ACYS192
BCYS192
GCYS192
HCYS192
ICYS192
JCYS192

site_idSWS_FT_FI5
Number of Residues12
DetailsSITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01339
ChainResidueDetails
CLYS330
DLYS330
ELYS330
FLYS330
GLYS330
HLYS330
ILYS330
JLYS330
KLYS330
LLYS330
ALYS330
BLYS330

site_idSWS_FT_FI6
Number of Residues12
DetailsMOD_RES: N6-carboxylysine => ECO:0000255|HAMAP-Rule:MF_01339
ChainResidueDetails
BCYS192
CCYS192
DCYS192
ECYS192
FCYS192
KCYS192
LCYS192
ACYS192
GCYS192
HCYS192
ICYS192
JCYS192

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PDB entries from 2024-05-15

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