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5K3I

Crystal structure of Acyl-CoA oxidase-1 in Caenorhabditis elegans complexed with FAD and ATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003997molecular_functionacyl-CoA oxidase activity
A0005504molecular_functionfatty acid binding
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005777cellular_componentperoxisome
A0005782cellular_componentperoxisomal matrix
A0006629biological_processlipid metabolic process
A0006631biological_processfatty acid metabolic process
A0006635biological_processfatty acid beta-oxidation
A0009058biological_processbiosynthetic process
A0016491molecular_functionoxidoreductase activity
A0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
A0033540biological_processfatty acid beta-oxidation using acyl-CoA oxidase
A0042811biological_processpheromone biosynthetic process
A0050660molecular_functionflavin adenine dinucleotide binding
A0055088biological_processlipid homeostasis
A0071949molecular_functionFAD binding
A1904070biological_processascaroside biosynthetic process
B0000166molecular_functionnucleotide binding
B0003997molecular_functionacyl-CoA oxidase activity
B0005504molecular_functionfatty acid binding
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005777cellular_componentperoxisome
B0005782cellular_componentperoxisomal matrix
B0006629biological_processlipid metabolic process
B0006631biological_processfatty acid metabolic process
B0006635biological_processfatty acid beta-oxidation
B0009058biological_processbiosynthetic process
B0016491molecular_functionoxidoreductase activity
B0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
B0033540biological_processfatty acid beta-oxidation using acyl-CoA oxidase
B0042811biological_processpheromone biosynthetic process
B0050660molecular_functionflavin adenine dinucleotide binding
B0055088biological_processlipid homeostasis
B0071949molecular_functionFAD binding
B1904070biological_processascaroside biosynthetic process
C0000166molecular_functionnucleotide binding
C0003997molecular_functionacyl-CoA oxidase activity
C0005504molecular_functionfatty acid binding
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0005777cellular_componentperoxisome
C0005782cellular_componentperoxisomal matrix
C0006629biological_processlipid metabolic process
C0006631biological_processfatty acid metabolic process
C0006635biological_processfatty acid beta-oxidation
C0009058biological_processbiosynthetic process
C0016491molecular_functionoxidoreductase activity
C0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
C0033540biological_processfatty acid beta-oxidation using acyl-CoA oxidase
C0042811biological_processpheromone biosynthetic process
C0050660molecular_functionflavin adenine dinucleotide binding
C0055088biological_processlipid homeostasis
C0071949molecular_functionFAD binding
C1904070biological_processascaroside biosynthetic process
D0000166molecular_functionnucleotide binding
D0003997molecular_functionacyl-CoA oxidase activity
D0005504molecular_functionfatty acid binding
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0005777cellular_componentperoxisome
D0005782cellular_componentperoxisomal matrix
D0006629biological_processlipid metabolic process
D0006631biological_processfatty acid metabolic process
D0006635biological_processfatty acid beta-oxidation
D0009058biological_processbiosynthetic process
D0016491molecular_functionoxidoreductase activity
D0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
D0033540biological_processfatty acid beta-oxidation using acyl-CoA oxidase
D0042811biological_processpheromone biosynthetic process
D0050660molecular_functionflavin adenine dinucleotide binding
D0055088biological_processlipid homeostasis
D0071949molecular_functionFAD binding
D1904070biological_processascaroside biosynthetic process
E0000166molecular_functionnucleotide binding
E0003997molecular_functionacyl-CoA oxidase activity
E0005504molecular_functionfatty acid binding
E0005515molecular_functionprotein binding
E0005524molecular_functionATP binding
E0005777cellular_componentperoxisome
E0005782cellular_componentperoxisomal matrix
E0006629biological_processlipid metabolic process
E0006631biological_processfatty acid metabolic process
E0006635biological_processfatty acid beta-oxidation
E0009058biological_processbiosynthetic process
E0016491molecular_functionoxidoreductase activity
E0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
E0033540biological_processfatty acid beta-oxidation using acyl-CoA oxidase
E0042811biological_processpheromone biosynthetic process
E0050660molecular_functionflavin adenine dinucleotide binding
E0055088biological_processlipid homeostasis
E0071949molecular_functionFAD binding
E1904070biological_processascaroside biosynthetic process
F0000166molecular_functionnucleotide binding
F0003997molecular_functionacyl-CoA oxidase activity
F0005504molecular_functionfatty acid binding
F0005515molecular_functionprotein binding
F0005524molecular_functionATP binding
F0005777cellular_componentperoxisome
F0005782cellular_componentperoxisomal matrix
F0006629biological_processlipid metabolic process
F0006631biological_processfatty acid metabolic process
F0006635biological_processfatty acid beta-oxidation
F0009058biological_processbiosynthetic process
F0016491molecular_functionoxidoreductase activity
F0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
F0033540biological_processfatty acid beta-oxidation using acyl-CoA oxidase
F0042811biological_processpheromone biosynthetic process
F0050660molecular_functionflavin adenine dinucleotide binding
F0055088biological_processlipid homeostasis
F0071949molecular_functionFAD binding
F1904070biological_processascaroside biosynthetic process
G0000166molecular_functionnucleotide binding
G0003997molecular_functionacyl-CoA oxidase activity
G0005504molecular_functionfatty acid binding
G0005515molecular_functionprotein binding
G0005524molecular_functionATP binding
G0005777cellular_componentperoxisome
G0005782cellular_componentperoxisomal matrix
G0006629biological_processlipid metabolic process
G0006631biological_processfatty acid metabolic process
G0006635biological_processfatty acid beta-oxidation
G0009058biological_processbiosynthetic process
G0016491molecular_functionoxidoreductase activity
G0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
G0033540biological_processfatty acid beta-oxidation using acyl-CoA oxidase
G0042811biological_processpheromone biosynthetic process
G0050660molecular_functionflavin adenine dinucleotide binding
G0055088biological_processlipid homeostasis
G0071949molecular_functionFAD binding
G1904070biological_processascaroside biosynthetic process
H0000166molecular_functionnucleotide binding
H0003997molecular_functionacyl-CoA oxidase activity
H0005504molecular_functionfatty acid binding
H0005515molecular_functionprotein binding
H0005524molecular_functionATP binding
H0005777cellular_componentperoxisome
H0005782cellular_componentperoxisomal matrix
H0006629biological_processlipid metabolic process
H0006631biological_processfatty acid metabolic process
H0006635biological_processfatty acid beta-oxidation
H0009058biological_processbiosynthetic process
H0016491molecular_functionoxidoreductase activity
H0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
H0033540biological_processfatty acid beta-oxidation using acyl-CoA oxidase
H0042811biological_processpheromone biosynthetic process
H0050660molecular_functionflavin adenine dinucleotide binding
H0055088biological_processlipid homeostasis
H0071949molecular_functionFAD binding
H1904070biological_processascaroside biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues25
Detailsbinding site for residue FAD A 701
ChainResidue
ALEU115
ATHR432
AGLU436
AMET438
AVAL439
BARG320
BGLN322
BVAL334
BTYR337
BTHR339
BGLN340
ATYR149
BARG343
BALA408
BGLY410
BGLY411
BTYR414
BHOH803
AGLN151
ATHR152
AGLY157
ATHR158
ATRP189
APRO190
AGLY191

site_idAC2
Number of Residues16
Detailsbinding site for residue ATP A 702
ChainResidue
ASER392
AHIS396
AASN437
AMET438
AARG533
AARG536
ATYR581
AHOH839
AHOH847
AHOH848
BHIS342
BARG343
BGLN404
BTYR573
BMG701
BHOH814

site_idAC3
Number of Residues2
Detailsbinding site for residue MG A 703
ChainResidue
AASP577
BATP703

site_idAC4
Number of Residues3
Detailsbinding site for residue MG B 701
ChainResidue
AATP702
AHOH839
BASP577

site_idAC5
Number of Residues24
Detailsbinding site for residue FAD B 702
ChainResidue
AARG320
AGLN322
AVAL334
ATYR337
ATHR339
AGLN340
AARG343
AALA408
AGLY410
AGLY411
ATYR414
BLEU115
BTYR149
BGLN151
BTHR152
BGLY157
BTHR158
BTRP189
BGLY191
BTHR432
BGLU436
BMET438
BVAL439
BHOH807

site_idAC6
Number of Residues14
Detailsbinding site for residue ATP B 703
ChainResidue
AHIS342
AARG343
AGLN404
ATYR573
AMG703
BSER392
BHIS396
BASN437
BMET438
BLEU441
BARG533
BARG536
BTYR581
BHOH864

site_idAC7
Number of Residues27
Detailsbinding site for residue FAD C 701
ChainResidue
CHOH824
CHOH848
DARG320
DGLN322
DVAL334
DTYR337
DGLN340
DARG343
DALA408
DGLY410
DGLY411
DTYR414
CLEU115
CTYR149
CGLN151
CTHR152
CGLY157
CTHR158
CTRP189
CPRO190
CGLY191
CTHR432
CGLU436
CMET438
CVAL439
CHOH806
CHOH821

site_idAC8
Number of Residues3
Detailsbinding site for residue MG C 702
ChainResidue
CASP577
DATP801
DHOH935

site_idAC9
Number of Residues15
Detailsbinding site for residue ATP C 703
ChainResidue
CSER392
CHIS396
CASN437
CMET438
CLEU441
CARG533
CARG536
CTYR581
CHOH811
DHIS342
DARG343
DGLN404
DTYR573
DMG802
DHOH916

site_idAD1
Number of Residues14
Detailsbinding site for residue ATP D 801
ChainResidue
CHIS342
CGLN404
CTYR573
CMG702
DSER392
DHIS396
DASN437
DMET438
DLEU441
DARG533
DARG536
DTYR581
DHOH931
DHOH935

site_idAD2
Number of Residues2
Detailsbinding site for residue MG D 802
ChainResidue
CARG533
CATP703

site_idAD3
Number of Residues25
Detailsbinding site for residue FAD D 803
ChainResidue
CARG320
CGLN322
CVAL334
CTYR337
CTHR339
CGLN340
CARG343
CALA408
CGLY410
CGLY411
DLEU115
DTYR149
DGLN151
DTHR152
DGLY157
DTHR158
DTRP189
DPRO190
DGLY191
DTHR432
DTYR433
DGLU436
DMET438
DVAL439
DHOH903

site_idAD4
Number of Residues24
Detailsbinding site for residue FAD E 701
ChainResidue
ELEU115
ETYR149
EGLN151
ETHR152
EGLY157
ETHR158
ETRP189
EPRO190
EGLY191
ETHR432
EGLU436
EMET438
EVAL439
FARG320
FGLN322
FVAL334
FTYR337
FGLN340
FARG343
FALA408
FGLY410
FGLY411
FTYR414
FHOH804

site_idAD5
Number of Residues3
Detailsbinding site for residue MG E 702
ChainResidue
EASP577
EHOH839
FATP702

site_idAD6
Number of Residues15
Detailsbinding site for residue ATP E 703
ChainResidue
ESER392
EHIS396
EASN437
EMET438
EARG533
EARG536
ETYR581
EHOH801
EHOH823
EHOH828
FHIS342
FARG343
FGLN404
FTYR573
FMG703

site_idAD7
Number of Residues23
Detailsbinding site for residue FAD F 701
ChainResidue
EARG320
EGLN322
EVAL334
ETYR337
EGLN340
EARG343
EALA408
EGLY410
EGLY411
ETYR414
EHOH826
FLEU115
FTYR149
FGLN151
FTHR152
FGLY157
FTHR158
FTRP189
FTHR432
FGLU436
FMET438
FVAL439
FHOH803

site_idAD8
Number of Residues11
Detailsbinding site for residue ATP F 702
ChainResidue
EHIS342
EGLN404
ETYR573
EMG702
FSER392
FHIS396
FASN437
FMET438
FARG533
FARG536
FTYR581

site_idAD9
Number of Residues2
Detailsbinding site for residue MG F 703
ChainResidue
EATP703
FASP577

site_idAE1
Number of Residues24
Detailsbinding site for residue FAD G 701
ChainResidue
GLEU115
GTYR149
GGLN151
GTHR152
GGLY157
GTHR158
GTRP189
GPRO190
GGLY191
GTHR432
GGLU436
GMET438
GVAL439
GHOH819
HARG320
HGLN322
HVAL334
HTYR337
HGLN340
HARG343
HALA408
HGLY410
HGLY411
HTYR414

site_idAE2
Number of Residues2
Detailsbinding site for residue MG G 702
ChainResidue
GASP577
HATP702

site_idAE3
Number of Residues13
Detailsbinding site for residue ATP G 703
ChainResidue
GSER392
GHIS396
GASN437
GMET438
GLEU441
GARG533
GARG536
GTYR581
HHIS342
HARG343
HGLN404
HTYR573
HMG703

site_idAE4
Number of Residues29
Detailsbinding site for residue FAD H 701
ChainResidue
GARG320
GGLN322
GVAL334
GTYR337
GTHR339
GGLN340
GARG343
GALA408
GGLY410
GGLY411
GTYR414
GHOH837
HLEU115
HTYR149
HGLN151
HTHR152
HGLY157
HTHR158
HTRP189
HPRO190
HGLY191
HTHR432
HGLU436
HMET438
HVAL439
HHOH803
HHOH835
HHOH849
HHOH858

site_idAE5
Number of Residues12
Detailsbinding site for residue ATP H 702
ChainResidue
GHIS342
GARG343
GGLN404
GTYR573
GMG702
HSER392
HHIS396
HASN437
HMET438
HARG533
HARG536
HTYR581

site_idAE6
Number of Residues2
Detailsbinding site for residue MG H 703
ChainResidue
GATP703
HASP577

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: Proton acceptor => ECO:0000255|PIRSR:PIRSR000168-1
ChainResidueDetails
AALA434
BALA434
CALA434
DALA434
EALA434
FALA434
GALA434
HALA434

site_idSWS_FT_FI2
Number of Residues48
DetailsBINDING: in other chain => ECO:0000269|PubMed:27551084, ECO:0007744|PDB:5K3I
ChainResidueDetails
ATYR149
BHIS396
BARG533
BTYR581
CTYR149
CGLY157
CSER392
CHIS396
CARG533
CTYR581
DTYR149
AGLY157
DGLY157
DSER392
DHIS396
DARG533
DTYR581
ETYR149
EGLY157
ESER392
EHIS396
EARG533
ASER392
ETYR581
FTYR149
FGLY157
FSER392
FHIS396
FARG533
FTYR581
GTYR149
GGLY157
GSER392
AHIS396
GHIS396
GARG533
GTYR581
HTYR149
HGLY157
HSER392
HHIS396
HARG533
HTYR581
AARG533
ATYR581
BTYR149
BGLY157
BSER392

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: in other chain => ECO:0000255|PIRSR:PIRSR000168-2, ECO:0000269|PubMed:27551084, ECO:0007744|PDB:5K3I
ChainResidueDetails
AGLY191
BGLY191
CGLY191
DGLY191
EGLY191
FGLY191
GGLY191
HGLY191

site_idSWS_FT_FI4
Number of Residues40
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:O62137
ChainResidueDetails
ALYS285
BTYR433
CLYS285
CARG295
CHIS342
CGLY411
CTYR433
DLYS285
DARG295
DHIS342
DGLY411
AARG295
DTYR433
ELYS285
EARG295
EHIS342
EGLY411
ETYR433
FLYS285
FARG295
FHIS342
FGLY411
AHIS342
FTYR433
GLYS285
GARG295
GHIS342
GGLY411
GTYR433
HLYS285
HARG295
HHIS342
HGLY411
AGLY411
HTYR433
ATYR433
BLYS285
BARG295
BHIS342
BGLY411

site_idSWS_FT_FI5
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:27551084, ECO:0007744|PDB:5K3I
ChainResidueDetails
AARG320
DARG320
DGLN340
DGLN404
EARG320
EGLN340
EGLN404
FARG320
FGLN340
FGLN404
GARG320
AGLN340
GGLN340
GGLN404
HARG320
HGLN340
HGLN404
AGLN404
BARG320
BGLN340
BGLN404
CARG320
CGLN340
CGLN404

site_idSWS_FT_FI6
Number of Residues8
DetailsBINDING: in other chain => ECO:0000250|UniProtKB:O62137
ChainResidueDetails
AGLU436
BGLU436
CGLU436
DGLU436
EGLU436
FGLU436
GGLU436
HGLU436

218853

PDB entries from 2024-04-24

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