5JY1
Crystal Structure of putative short-chain dehydrogenase/reductase from Burkholderia xenovorans LB400 bound to NAD
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0004316 | molecular_function | 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
B | 0000166 | molecular_function | nucleotide binding |
B | 0004316 | molecular_function | 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
C | 0000166 | molecular_function | nucleotide binding |
C | 0004316 | molecular_function | 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
D | 0000166 | molecular_function | nucleotide binding |
D | 0004316 | molecular_function | 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 31 |
Details | binding site for residue NAD A 301 |
Chain | Residue |
A | GLY13 |
A | ASN90 |
A | ALA91 |
A | PHE92 |
A | VAL93 |
A | PHE141 |
A | TYR142 |
A | SER143 |
A | TYR156 |
A | LYS160 |
A | PRO186 |
A | GLY16 |
A | THR187 |
A | ALA188 |
A | ALA191 |
A | ACT304 |
A | HOH406 |
A | HOH420 |
A | HOH458 |
A | HOH490 |
A | HOH528 |
A | HOH564 |
A | GLY17 |
A | HOH567 |
A | HOH569 |
A | ILE18 |
A | GLU37 |
A | ILE38 |
A | THR62 |
A | ASP63 |
A | VAL64 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue CL A 302 |
Chain | Residue |
A | THR187 |
A | ALA188 |
A | ARG211 |
A | GLY217 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue EDO A 303 |
Chain | Residue |
A | PHE92 |
A | PRO94 |
A | THR95 |
A | TYR156 |
A | HOH439 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue ACT A 304 |
Chain | Residue |
A | TYR156 |
A | THR192 |
A | NAD301 |
A | HOH480 |
site_id | AC5 |
Number of Residues | 2 |
Details | binding site for residue EDO A 305 |
Chain | Residue |
A | ARG131 |
A | HOH436 |
site_id | AC6 |
Number of Residues | 2 |
Details | binding site for residue ACT A 306 |
Chain | Residue |
A | GLU71 |
A | HOH436 |
site_id | AC7 |
Number of Residues | 30 |
Details | binding site for residue NAD B 301 |
Chain | Residue |
B | GLY13 |
B | GLY16 |
B | GLY17 |
B | ILE18 |
B | GLU37 |
B | ILE38 |
B | THR62 |
B | ASP63 |
B | VAL64 |
B | ASN90 |
B | PHE92 |
B | VAL93 |
B | TYR142 |
B | SER143 |
B | TYR156 |
B | LYS160 |
B | PRO186 |
B | THR187 |
B | ALA188 |
B | ALA191 |
B | ACT304 |
B | HOH401 |
B | HOH404 |
B | HOH439 |
B | HOH465 |
B | HOH483 |
B | HOH540 |
B | HOH557 |
B | HOH563 |
B | HOH565 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue CL B 302 |
Chain | Residue |
B | THR187 |
B | ALA188 |
B | ARG211 |
B | GLY217 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue EDO B 303 |
Chain | Residue |
B | PHE92 |
B | PRO94 |
B | THR95 |
B | TYR156 |
B | HOH445 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue ACT B 304 |
Chain | Residue |
B | TYR156 |
B | THR192 |
B | NAD301 |
B | HOH477 |
site_id | AD2 |
Number of Residues | 29 |
Details | binding site for residue NAD C 301 |
Chain | Residue |
C | VAL64 |
C | ASN90 |
C | PHE92 |
C | VAL93 |
C | TYR142 |
C | SER143 |
C | TYR156 |
C | LYS160 |
C | PRO186 |
C | THR187 |
C | ALA188 |
C | ALA191 |
C | ACT303 |
C | HOH402 |
C | HOH431 |
C | HOH461 |
C | HOH479 |
C | HOH485 |
C | HOH493 |
C | HOH538 |
C | HOH542 |
C | GLY13 |
C | GLY16 |
C | GLY17 |
C | ILE18 |
C | GLU37 |
C | ILE38 |
C | THR62 |
C | ASP63 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue EDO C 302 |
Chain | Residue |
C | PHE92 |
C | PRO94 |
C | THR95 |
C | TYR156 |
C | HOH507 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue ACT C 303 |
Chain | Residue |
C | TYR156 |
C | THR192 |
C | NAD301 |
site_id | AD5 |
Number of Residues | 4 |
Details | binding site for residue CL C 304 |
Chain | Residue |
C | THR187 |
C | ALA188 |
C | ARG211 |
C | GLY217 |
site_id | AD6 |
Number of Residues | 1 |
Details | binding site for residue EDO C 305 |
Chain | Residue |
C | HOH554 |
site_id | AD7 |
Number of Residues | 28 |
Details | binding site for residue NAD D 301 |
Chain | Residue |
D | GLY13 |
D | GLY16 |
D | GLY17 |
D | ILE18 |
D | GLU37 |
D | ILE38 |
D | THR62 |
D | ASP63 |
D | VAL64 |
D | ASN90 |
D | PHE92 |
D | VAL93 |
D | TYR142 |
D | SER143 |
D | TYR156 |
D | LYS160 |
D | PRO186 |
D | THR187 |
D | ALA188 |
D | ALA191 |
D | ACT302 |
D | HOH409 |
D | HOH443 |
D | HOH479 |
D | HOH489 |
D | HOH496 |
D | HOH551 |
D | HOH575 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue ACT D 302 |
Chain | Residue |
D | TYR156 |
D | THR192 |
D | NAD301 |
D | HOH469 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue CL D 303 |
Chain | Residue |
D | THR187 |
D | ALA188 |
D | ARG211 |
D | GLY217 |
site_id | AE1 |
Number of Residues | 4 |
Details | binding site for residue EDO D 304 |
Chain | Residue |
D | PRO94 |
D | THR95 |
D | TYR156 |
D | HOH473 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue EDO D 305 |
Chain | Residue |
B | THR146 |
B | HOH444 |
D | ARG168 |
Functional Information from PROSITE/UniProt
site_id | PS00061 |
Number of Residues | 29 |
Details | ADH_SHORT Short-chain dehydrogenases/reductases family signature. SidtetgawlHgdYNTAKAGIvGLTrSAA |
Chain | Residue | Details |
A | SER143-ALA171 |