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5JX3

Wild type D4 in orthorhombic space group

Replaces:  2OWR
Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0004844molecular_functionuracil DNA N-glycosylase activity
A0006281biological_processDNA repair
A0016787molecular_functionhydrolase activity
A0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
B0003677molecular_functionDNA binding
B0004844molecular_functionuracil DNA N-glycosylase activity
B0006281biological_processDNA repair
B0016787molecular_functionhydrolase activity
B0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
C0003677molecular_functionDNA binding
C0004844molecular_functionuracil DNA N-glycosylase activity
C0006281biological_processDNA repair
C0016787molecular_functionhydrolase activity
C0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
D0003677molecular_functionDNA binding
D0004844molecular_functionuracil DNA N-glycosylase activity
D0006281biological_processDNA repair
D0016787molecular_functionhydrolase activity
D0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
E0003677molecular_functionDNA binding
E0004844molecular_functionuracil DNA N-glycosylase activity
E0006281biological_processDNA repair
E0016787molecular_functionhydrolase activity
E0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
F0003677molecular_functionDNA binding
F0004844molecular_functionuracil DNA N-glycosylase activity
F0006281biological_processDNA repair
F0016787molecular_functionhydrolase activity
F0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
G0003677molecular_functionDNA binding
G0004844molecular_functionuracil DNA N-glycosylase activity
G0006281biological_processDNA repair
G0016787molecular_functionhydrolase activity
G0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
H0003677molecular_functionDNA binding
H0004844molecular_functionuracil DNA N-glycosylase activity
H0006281biological_processDNA repair
H0016787molecular_functionhydrolase activity
H0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue GOL A 401
ChainResidue
ASER153
AVAL154
ATHR175
AASP205
AHOH526
AHOH527
BARG167

site_idAC2
Number of Residues8
Detailsbinding site for residue GOL A 402
ChainResidue
AASP68
ATYR70
APHE79
ASER88
AASN120
AHOH560
AGLY66
AILE67

site_idAC3
Number of Residues4
Detailsbinding site for residue GOL A 403
ChainResidue
AGLY159
AASP162
AHIS181
AALA183

site_idAC4
Number of Residues7
Detailsbinding site for residue GOL B 301
ChainResidue
BGLY66
BILE67
BASP68
BTYR70
BPHE79
BSER88
BASN120

site_idAC5
Number of Residues5
Detailsbinding site for residue GOL B 302
ChainResidue
BGLY159
BLYS160
BTHR161
BASP162
BHIS181

site_idAC6
Number of Residues8
Detailsbinding site for residue GOL C 301
ChainResidue
CGLY66
CASP68
CTYR70
CPRO78
CPHE79
CASN120
CHOH432
CHOH434

site_idAC7
Number of Residues9
Detailsbinding site for residue GOL D 301
ChainResidue
DGLU32
DVAL33
DTYR136
DTRP137
DASP138
DLYS139
DILE140
DHOH446
EASN165

site_idAC8
Number of Residues10
Detailsbinding site for residue GOL D 302
ChainResidue
DGLY66
DASP68
DTYR70
DPRO78
DPHE79
DSER88
DASN120
DHOH430
DHOH477
DHOH516

site_idAC9
Number of Residues5
Detailsbinding site for residue GOL D 303
ChainResidue
DTYR70
DPRO71
DLYS87
DSER88
DHOH401

site_idAD1
Number of Residues8
Detailsbinding site for residue GOL E 301
ChainResidue
EGLY66
EILE67
EASP68
ETYR70
EPHE79
ESER88
EASN120
EHOH467

site_idAD2
Number of Residues5
Detailsbinding site for residue GOL E 302
ChainResidue
DLYS126
EARG39
EASP40
EHOH415
GTYR11

site_idAD3
Number of Residues8
Detailsbinding site for residue GOL F 301
ChainResidue
FGLY66
FASP68
FTYR70
FPHE79
FSER88
FASN120
FHOH404
FHOH440

site_idAD4
Number of Residues5
Detailsbinding site for residue GOL F 302
ChainResidue
FLYS160
FTHR161
FTYR180
FHIS181
FARG185

site_idAD5
Number of Residues5
Detailsbinding site for residue CL F 303
ChainResidue
FSER7
FHIS8
FTYR30
FASN31
FALA34

site_idAD6
Number of Residues8
Detailsbinding site for residue GOL G 301
ChainResidue
GASN120
GHOH411
GHOH427
GGLY66
GASP68
GTYR70
GPHE79
GSER88

site_idAD7
Number of Residues1
Detailsbinding site for residue CL G 302
ChainResidue
GLYS160

site_idAD8
Number of Residues6
Detailsbinding site for residue GOL H 301
ChainResidue
HGLY66
HASP68
HTYR70
HPHE79
HASN120
HHOH423

site_idAD9
Number of Residues1
Detailsbinding site for residue CL H 302
ChainResidue
HLYS160

Functional Information from PROSITE/UniProt
site_idPS00130
Number of Residues10
DetailsU_DNA_GLYCOSYLASE Uracil-DNA glycosylase signature. RVCVcGIDPY
ChainResidueDetails
AARG61-TYR70

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU10072
ChainResidueDetails
AASP68
BASP68
CASP68
DASP68
EASP68
FASP68
GASP68
HASP68

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PDB entries from 2024-06-12

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