5HDM
Crystal structure of Arabidopsis thaliana glutamate-1-semialdehyde-2,1-aminomutase
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005829 | cellular_component | cytosol |
A | 0006782 | biological_process | protoporphyrinogen IX biosynthetic process |
A | 0008483 | molecular_function | transaminase activity |
A | 0009507 | cellular_component | chloroplast |
A | 0009536 | cellular_component | plastid |
A | 0009570 | cellular_component | chloroplast stroma |
A | 0009941 | cellular_component | chloroplast envelope |
A | 0015995 | biological_process | chlorophyll biosynthetic process |
A | 0016853 | molecular_function | isomerase activity |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0033014 | biological_process | tetrapyrrole biosynthetic process |
A | 0042286 | molecular_function | glutamate-1-semialdehyde 2,1-aminomutase activity |
A | 0042803 | molecular_function | protein homodimerization activity |
A | 0048046 | cellular_component | apoplast |
B | 0005829 | cellular_component | cytosol |
B | 0006782 | biological_process | protoporphyrinogen IX biosynthetic process |
B | 0008483 | molecular_function | transaminase activity |
B | 0009507 | cellular_component | chloroplast |
B | 0009536 | cellular_component | plastid |
B | 0009570 | cellular_component | chloroplast stroma |
B | 0009941 | cellular_component | chloroplast envelope |
B | 0015995 | biological_process | chlorophyll biosynthetic process |
B | 0016853 | molecular_function | isomerase activity |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0033014 | biological_process | tetrapyrrole biosynthetic process |
B | 0042286 | molecular_function | glutamate-1-semialdehyde 2,1-aminomutase activity |
B | 0042803 | molecular_function | protein homodimerization activity |
B | 0048046 | cellular_component | apoplast |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 15 |
Details | binding site for residue PMP A 500 |
Chain | Residue |
A | SER123 |
A | MET249 |
A | LYS274 |
A | HOH741 |
A | HOH815 |
B | THR306 |
B | HOH742 |
A | GLY124 |
A | THR125 |
A | TYR151 |
A | GLY153 |
A | GLU213 |
A | ASN218 |
A | ASP246 |
A | VAL248 |
site_id | AC2 |
Number of Residues | 16 |
Details | binding site for residue PMP B 502 |
Chain | Residue |
A | THR306 |
B | SER123 |
B | GLY124 |
B | THR125 |
B | TYR151 |
B | GLY153 |
B | GLU213 |
B | ASN218 |
B | ASP246 |
B | MET249 |
B | LYS274 |
B | PLP501 |
B | HOH636 |
B | HOH676 |
B | HOH710 |
B | HOH799 |
site_id | AC3 |
Number of Residues | 24 |
Details | binding site for Di-peptide PLP B 501 and LYS B 274 |
Chain | Residue |
A | THR306 |
B | TRP68 |
B | PRO70 |
B | SER123 |
B | GLY124 |
B | THR125 |
B | TYR151 |
B | GLU213 |
B | ASN218 |
B | ASP246 |
B | VAL248 |
B | MET249 |
B | GLY273 |
B | ILE275 |
B | ILE276 |
B | GLY277 |
B | GLY278 |
B | VAL282 |
B | PMP502 |
B | HOH676 |
B | HOH691 |
B | HOH710 |
B | HOH799 |
B | HOH883 |
Functional Information from PROSITE/UniProt
site_id | PS00600 |
Number of Residues | 37 |
Details | AA_TRANSFER_CLASS_3 Aminotransferases class-III pyridoxal-phosphate attachment site. LIfDEVmt.GF.RlAyggaqeyfgitp....DLTtlGKiigGG |
Chain | Residue | Details |
A | LEU243-GLY279 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:27303897, ECO:0007744|PDB:5HDM |
Chain | Residue | Details |
A | LYS274 | |
B | LYS274 |