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5FAY

Y208F mutant of choline TMA-lyase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005829cellular_componentcytosol
A0016829molecular_functionlyase activity
A0016840molecular_functioncarbon-nitrogen lyase activity
A0033265molecular_functioncholine binding
A0042426biological_processcholine catabolic process
A0042803molecular_functionprotein homodimerization activity
B0003824molecular_functioncatalytic activity
B0005829cellular_componentcytosol
B0016829molecular_functionlyase activity
B0016840molecular_functioncarbon-nitrogen lyase activity
B0033265molecular_functioncholine binding
B0042426biological_processcholine catabolic process
B0042803molecular_functionprotein homodimerization activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue NA A 901
ChainResidue
ASER746
AMET748
AHOH1415
AHOH1572
AHOH1757
BHOH1672

site_idAC2
Number of Residues7
Detailsbinding site for residue MLI A 902
ChainResidue
AHOH1319
AHOH1406
AHOH1482
AHOH1712
AARG572
ALEU689
AHOH1015

site_idAC3
Number of Residues6
Detailsbinding site for residue MLI A 903
ChainResidue
AARG238
ATHR633
AGLN636
AHOH1047
AHOH1102
AHOH1338

site_idAC4
Number of Residues5
Detailsbinding site for residue MLI A 904
ChainResidue
ALYS102
AARG105
AHOH1074
AHOH1528
AHOH1705

site_idAC5
Number of Residues9
Detailsbinding site for residue MLI A 905
ChainResidue
AGLY49
ASER50
AHIS51
AHOH1011
AHOH1019
AHOH1040
AHOH1098
AHOH1122
BLYS71

site_idAC6
Number of Residues7
Detailsbinding site for residue MLI A 906
ChainResidue
AHIS519
AASP535
ALEU536
AHOH1023
AHOH1026
AHOH1103
AHOH1208

site_idAC7
Number of Residues6
Detailsbinding site for residue NA A 907
ChainResidue
AGLU242
ALEU244
AHOH1018
AHOH1225
AHOH1617
AHOH1702

site_idAC8
Number of Residues9
Detailsbinding site for residue CHT A 908
ChainResidue
APHE208
AASP216
ATHR334
AGLY488
ACYS489
AGLU491
ATHR502
ATYR506
ALEU698

site_idAC9
Number of Residues6
Detailsbinding site for residue NA B 901
ChainResidue
AHOH1656
BSER746
BMET748
BHOH1427
BHOH1527
BHOH1645

site_idAD1
Number of Residues6
Detailsbinding site for residue MLI B 902
ChainResidue
BARG572
BLEU689
BHOH1027
BHOH1147
BHOH1250
BHOH1617

site_idAD2
Number of Residues7
Detailsbinding site for residue MLI B 903
ChainResidue
BARG405
BARG497
BHOH1032
BHOH1065
BHOH1088
BHOH1112
BHOH1638

site_idAD3
Number of Residues5
Detailsbinding site for residue MLI B 904
ChainResidue
BHIS519
BASP535
BLEU536
BSER537
BHOH1010

site_idAD4
Number of Residues2
Detailsbinding site for residue MLI B 905
ChainResidue
BHOH1020
BHOH1652

site_idAD5
Number of Residues9
Detailsbinding site for residue CHT B 906
ChainResidue
BPHE208
BASP216
BGLY488
BCYS489
BGLU491
BTHR502
BTYR506
BLEU698
BILE700

Functional Information from PROSITE/UniProt
site_idPS00850
Number of Residues9
DetailsGLY_RADICAL_1 Glycine radical domain signature. VvRVAGYSA
ChainResidueDetails
AVAL816-ALA824

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Cysteine radical intermediate => ECO:0000255|HAMAP-Rule:MF_02058, ECO:0000305|PubMed:23151509, ECO:0000305|PubMed:24854437
ChainResidueDetails
ACYS489
BCYS489

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_02058, ECO:0000305|PubMed:24854437
ChainResidueDetails
AGLU491
BGLU491

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Glycine radical => ECO:0000255|HAMAP-Rule:MF_02058, ECO:0000305|PubMed:23151509, ECO:0000305|PubMed:24854437
ChainResidueDetails
AGLY821
BGLY821

219869

PDB entries from 2024-05-15

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