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5EFN

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 (H574A) in complex with histone H4 Lys6 tripeptide substrate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue ZN B 801
ChainResidue
BASP612
BHIS614
BASP705

site_idAC2
Number of Residues5
Detailsbinding site for residue K B 802
ChainResidue
BASP610
BASP612
BHIS614
BSER633
BLEU634

site_idAC3
Number of Residues6
Detailsbinding site for residue K B 803
ChainResidue
BASP626
BVAL629
BTYR662
BHOH998
BHOH1025
BPHE623

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO B 804
ChainResidue
BARG481
BSER484
BARG485
BHOH909

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO B 805
ChainResidue
BGLU576
BTHR579
BHOH918
BHOH1060

site_idAC6
Number of Residues4
Detailsbinding site for residue MCM F 101
ChainResidue
BPRO464
BLEU712
BHOH1098
FGLY3

site_idAC7
Number of Residues3
Detailsbinding site for residue ZN A 801
ChainResidue
AASP612
AHIS614
AASP705

site_idAC8
Number of Residues5
Detailsbinding site for residue K A 802
ChainResidue
AASP610
AASP612
AHIS614
ASER633
ALEU634

site_idAC9
Number of Residues6
Detailsbinding site for residue K A 803
ChainResidue
APHE623
AASP626
AVAL629
ATYR662
AHOH999
AHOH1053

site_idAD1
Number of Residues6
Detailsbinding site for residue EDO A 804
ChainResidue
AGLU528
ATYR529
AASP578
ATHR579
AHOH902
AHOH1008

site_idAD2
Number of Residues4
Detailsbinding site for residue MCM E 101
ChainResidue
AHIS462
APRO464
ALEU712
EGLY3

219140

PDB entries from 2024-05-01

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