5A9E

Cryo-electron tomography and subtomogram averaging of Rous-Sarcoma- Virus deltaMBD virus-like particles

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003676	molecular_function	nucleic acid binding
A	0008270	molecular_function	zinc ion binding
A	0016032	biological_process	viral process
B	0003676	molecular_function	nucleic acid binding
B	0008270	molecular_function	zinc ion binding
B	0016032	biological_process	viral process
C	0003676	molecular_function	nucleic acid binding
C	0008270	molecular_function	zinc ion binding
C	0016032	biological_process	viral process
D	0003676	molecular_function	nucleic acid binding
D	0008270	molecular_function	zinc ion binding
D	0016032	biological_process	viral process
E	0003676	molecular_function	nucleic acid binding
E	0008270	molecular_function	zinc ion binding
E	0016032	biological_process	viral process
F	0003676	molecular_function	nucleic acid binding
F	0008270	molecular_function	zinc ion binding
F	0016032	biological_process	viral process
G	0003676	molecular_function	nucleic acid binding
G	0008270	molecular_function	zinc ion binding
G	0016032	biological_process	viral process
H	0003676	molecular_function	nucleic acid binding
H	0008270	molecular_function	zinc ion binding
H	0016032	biological_process	viral process
I	0003676	molecular_function	nucleic acid binding
I	0008270	molecular_function	zinc ion binding
I	0016032	biological_process	viral process
J	0003676	molecular_function	nucleic acid binding
J	0008270	molecular_function	zinc ion binding
J	0016032	biological_process	viral process
K	0003676	molecular_function	nucleic acid binding
K	0008270	molecular_function	zinc ion binding
K	0016032	biological_process	viral process
L	0003676	molecular_function	nucleic acid binding
L	0008270	molecular_function	zinc ion binding
L	0016032	biological_process	viral process
M	0003676	molecular_function	nucleic acid binding
M	0008270	molecular_function	zinc ion binding
M	0016032	biological_process	viral process
N	0003676	molecular_function	nucleic acid binding
N	0008270	molecular_function	zinc ion binding
N	0016032	biological_process	viral process
O	0003676	molecular_function	nucleic acid binding
O	0008270	molecular_function	zinc ion binding
O	0016032	biological_process	viral process
P	0003676	molecular_function	nucleic acid binding
P	0008270	molecular_function	zinc ion binding
P	0016032	biological_process	viral process
Q	0003676	molecular_function	nucleic acid binding
Q	0008270	molecular_function	zinc ion binding
Q	0016032	biological_process	viral process
R	0003676	molecular_function	nucleic acid binding
R	0008270	molecular_function	zinc ion binding
R	0016032	biological_process	viral process

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	306
Details	ZN_FING: CCHC-type 1 => ECO:0000255|PROSITE-ProRule:PRU00047

Chain	Residue	Details
A	GLY507-LYS524
J	GLY507-LYS524
K	GLY507-LYS524
L	GLY507-LYS524
M	GLY507-LYS524
N	GLY507-LYS524
O	GLY507-LYS524
P	GLY507-LYS524
Q	GLY507-LYS524
R	GLY507-LYS524
B	GLY507-LYS524
C	GLY507-LYS524
D	GLY507-LYS524
E	GLY507-LYS524
F	GLY507-LYS524
G	GLY507-LYS524
H	GLY507-LYS524
I	GLY507-LYS524

---

site_id	SWS_FT_FI2
Number of Residues	306
Details	ZN_FING: CCHC-type 2 => ECO:0000255|PROSITE-ProRule:PRU00047

Chain	Residue	Details
A	GLU533-LYS550
J	GLU533-LYS550
K	GLU533-LYS550
L	GLU533-LYS550
M	GLU533-LYS550
N	GLU533-LYS550
O	GLU533-LYS550
P	GLU533-LYS550
Q	GLU533-LYS550
R	GLU533-LYS550
B	GLU533-LYS550
C	GLU533-LYS550
D	GLU533-LYS550
E	GLU533-LYS550
F	GLU533-LYS550
G	GLU533-LYS550
H	GLU533-LYS550
I	GLU533-LYS550

---

site_id	SWS_FT_FI3
Number of Residues	108
Details	SITE: Cleavage; by viral protease p15 => ECO:0000269|PubMed:8627817, ECO:0000269|PubMed:8636100

Chain	Residue	Details
A	TYR155
B	MET239
Q	MET239
Q	MET488
Q	SER577
R	TYR155
R	ALA166
R	GLY177
R	MET239
R	MET488
R	SER577
B	MET488
B	SER577
C	TYR155
C	ALA166
C	GLY177
C	MET239
C	MET488
C	SER577
D	TYR155
A	ALA166
D	ALA166
D	GLY177
D	MET239
D	MET488
D	SER577
E	TYR155
E	ALA166
E	GLY177
E	MET239
E	MET488
A	GLY177
E	SER577
F	TYR155
F	ALA166
F	GLY177
F	MET239
F	MET488
F	SER577
G	TYR155
G	ALA166
G	GLY177
A	MET239
G	MET239
G	MET488
G	SER577
H	TYR155
H	ALA166
H	GLY177
H	MET239
H	MET488
H	SER577
I	TYR155
A	MET488
I	ALA166
I	GLY177
I	MET239
I	MET488
I	SER577
J	TYR155
J	ALA166
J	GLY177
J	MET239
J	MET488
A	SER577
J	SER577
K	TYR155
K	ALA166
K	GLY177
K	MET239
K	MET488
K	SER577
L	TYR155
L	ALA166
L	GLY177
B	TYR155
L	MET239
L	MET488
L	SER577
M	TYR155
M	ALA166
M	GLY177
M	MET239
M	MET488
M	SER577
N	TYR155
B	ALA166
N	ALA166
N	GLY177
N	MET239
N	MET488
N	SER577
O	TYR155
O	ALA166
O	GLY177
O	MET239
O	MET488
B	GLY177
O	SER577
P	TYR155
P	ALA166
P	GLY177
P	MET239
P	MET488
P	SER577
Q	TYR155
Q	ALA166
Q	GLY177

---

site_id	SWS_FT_FI4
Number of Residues	36
Details	SITE: Involved in capsid protein dimerization upon acidification => ECO:0000269|PubMed:19446529

Chain	Residue	Details
A	ASP418
E	ASP430
F	ASP418
F	ASP430
G	ASP418
G	ASP430
H	ASP418
H	ASP430
I	ASP418
I	ASP430
J	ASP418
A	ASP430
J	ASP430
K	ASP418
K	ASP430
L	ASP418
L	ASP430
M	ASP418
M	ASP430
N	ASP418
N	ASP430
O	ASP418
B	ASP418
O	ASP430
P	ASP418
P	ASP430
Q	ASP418
Q	ASP430
R	ASP418
R	ASP430
B	ASP430
C	ASP418
C	ASP430
D	ASP418
D	ASP430
E	ASP418

---

site_id	SWS_FT_FI5
Number of Residues	18
Details	SITE: Cleavage; by viral protease p15 => ECO:0000269|PubMed:28588198, ECO:0000269|PubMed:8627817, ECO:0000269|PubMed:8636100

Chain	Residue	Details
A	ALA476
J	ALA476
K	ALA476
L	ALA476
M	ALA476
N	ALA476
O	ALA476
P	ALA476
Q	ALA476
R	ALA476
B	ALA476
C	ALA476
D	ALA476
E	ALA476
F	ALA476
G	ALA476
H	ALA476
I	ALA476

---

site_id	SWS_FT_FI6
Number of Residues	18
Details	SITE: Cleavage; by viral protease p15 => ECO:0000269|PubMed:28588198, ECO:0000269|PubMed:8627817

Chain	Residue	Details
A	MET479
J	MET479
K	MET479
L	MET479
M	MET479
N	MET479
O	MET479
P	MET479
Q	MET479
R	MET479
B	MET479
C	MET479
D	MET479
E	MET479
F	MET479
G	MET479
H	MET479
I	MET479

---