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4UOG

Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dCDP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004550molecular_functionnucleoside diphosphate kinase activity
A0005524molecular_functionATP binding
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
A0009142biological_processnucleoside triphosphate biosynthetic process
A0016301molecular_functionkinase activity
A0046872molecular_functionmetal ion binding
B0004550molecular_functionnucleoside diphosphate kinase activity
B0005524molecular_functionATP binding
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
B0009142biological_processnucleoside triphosphate biosynthetic process
B0016301molecular_functionkinase activity
B0046872molecular_functionmetal ion binding
C0004550molecular_functionnucleoside diphosphate kinase activity
C0005524molecular_functionATP binding
C0006183biological_processGTP biosynthetic process
C0006228biological_processUTP biosynthetic process
C0006241biological_processCTP biosynthetic process
C0009142biological_processnucleoside triphosphate biosynthetic process
C0016301molecular_functionkinase activity
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE YYY B 1152
ChainResidue
BLYS11
BMG1153
BHOH2072
BHOH2080
BHOH2121
BHOH2123
BHOH2124
BLEU54
BPHE59
BLEU63
BARG87
BTHR93
BVAL111
BGLY112
BASN114

site_idAC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE YYY A 1152
ChainResidue
ALYS11
ATYR51
ALEU54
APHE59
ALEU63
AARG87
ATHR93
AARG94
AARG104
AVAL111
AASN114
AMG1153
AHOH2013
AHOH2096

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE YYY C 1152
ChainResidue
CLYS11
CTYR51
CLEU54
CPHE59
CLEU63
CARG87
CTHR93
CARG104
CVAL111
CASN114
CMG1153
CHOH2067
CHOH2071
CHOH2092
CHOH2093

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG B 1153
ChainResidue
BYYY1152

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG A 1153
ChainResidue
AASP120
AYYY1152

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 1153
ChainResidue
CASP120
CYYY1152
CHOH2059
CHOH2060
CHOH2093

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NiiHGSDSV
ChainResidueDetails
AASN114-VAL122

220113

PDB entries from 2024-05-22

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