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4RIZ

The crystal structure of Y333Q mutant pyridoxal-dependent decarboxylase from Sphaerobacter thermophilus dsm 20745

Functional Information from GO Data
ChainGOidnamespacecontents
A0004782molecular_functionsulfinoalanine decarboxylase activity
A0005737cellular_componentcytoplasm
A0016829molecular_functionlyase activity
A0016830molecular_functioncarbon-carbon lyase activity
A0016831molecular_functioncarboxy-lyase activity
A0019752biological_processcarboxylic acid metabolic process
A0030170molecular_functionpyridoxal phosphate binding
B0004782molecular_functionsulfinoalanine decarboxylase activity
B0005737cellular_componentcytoplasm
B0016829molecular_functionlyase activity
B0016830molecular_functioncarbon-carbon lyase activity
B0016831molecular_functioncarboxy-lyase activity
B0019752biological_processcarboxylic acid metabolic process
B0030170molecular_functionpyridoxal phosphate binding
C0004782molecular_functionsulfinoalanine decarboxylase activity
C0005737cellular_componentcytoplasm
C0016829molecular_functionlyase activity
C0016830molecular_functioncarbon-carbon lyase activity
C0016831molecular_functioncarboxy-lyase activity
C0019752biological_processcarboxylic acid metabolic process
C0030170molecular_functionpyridoxal phosphate binding
D0004782molecular_functionsulfinoalanine decarboxylase activity
D0005737cellular_componentcytoplasm
D0016829molecular_functionlyase activity
D0016830molecular_functioncarbon-carbon lyase activity
D0016831molecular_functioncarboxy-lyase activity
D0019752biological_processcarboxylic acid metabolic process
D0030170molecular_functionpyridoxal phosphate binding
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE PMP A 501
ChainResidue
AGLY150
AGLN303
ALLP304
AHOH620
AHOH741
AHOH841
BTHR351
AGLY151
ASER152
AHIS190
AGLY245
ATHR247
AASP272
AALA274
AASN301

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 502
ChainResidue
AHIS353
AHOH685
AHOH686
BHIS353
BHOH629

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 501
ChainResidue
BLEU136
BPHE137
BARG286
BGLU293

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 503
ChainResidue
BLEU374
BASP377
BGLY378
BLEU381
BLEU454
BLEU455
BASN456
BPRO457
BHOH648

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA B 504
ChainResidue
AGLU171
APRO172
BARG180
BLEU202
BGLY203
BALA205
BALA206

site_idAC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE PMP C 2001
ChainResidue
CGLY150
CGLY151
CSER152
CHIS190
CTHR247
CASP272
CALA274
CASN301
CGLN303
CLLP304
CHOH2217
CHOH2261
DTHR351

site_idAC7
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PMP D 501
ChainResidue
CTHR351
CHOH2127
DGLY150
DGLY151
DSER152
DHIS190
DGLY245
DTHR247
DASP272
DALA274
DASN301
DGLN303
DLLP304
DHOH694

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL D 502
ChainResidue
DLEU136
DARG286
DALA290
DGLU293

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA D 503
ChainResidue
CGLU171
CPRO172
DARG180
DLEU202
DGLY203
DALA205
DALA206

220113

PDB entries from 2024-05-22

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