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4RAD

Aza-acyclic nucleoside phosphonates containing a second phosphonate group as inhibitors of the human, Plasmodium falciparum and vivax 6-oxopurine phosphoribosyltransferases and their pro-drugs as antimalarial agents

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0001913biological_processT cell mediated cytotoxicity
A0001975biological_processresponse to amphetamine
A0004422molecular_functionhypoxanthine phosphoribosyltransferase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006164biological_processpurine nucleotide biosynthetic process
A0006166biological_processpurine ribonucleoside salvage
A0006178biological_processguanine salvage
A0007625biological_processgrooming behavior
A0007626biological_processlocomotory behavior
A0016757molecular_functionglycosyltransferase activity
A0021756biological_processstriatum development
A0021895biological_processcerebral cortex neuron differentiation
A0021954biological_processcentral nervous system neuron development
A0032263biological_processGMP salvage
A0032264biological_processIMP salvage
A0042417biological_processdopamine metabolic process
A0042802molecular_functionidentical protein binding
A0043103biological_processhypoxanthine salvage
A0044209biological_processAMP salvage
A0045964biological_processpositive regulation of dopamine metabolic process
A0046038biological_processGMP catabolic process
A0046040biological_processIMP metabolic process
A0046083biological_processadenine metabolic process
A0046100biological_processhypoxanthine metabolic process
A0046651biological_processlymphocyte proliferation
A0046872molecular_functionmetal ion binding
A0048813biological_processdendrite morphogenesis
A0051289biological_processprotein homotetramerization
A0052657molecular_functionguanine phosphoribosyltransferase activity
A0070062cellular_componentextracellular exosome
A0071542biological_processdopaminergic neuron differentiation
B0000166molecular_functionnucleotide binding
B0000287molecular_functionmagnesium ion binding
B0001913biological_processT cell mediated cytotoxicity
B0001975biological_processresponse to amphetamine
B0004422molecular_functionhypoxanthine phosphoribosyltransferase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006164biological_processpurine nucleotide biosynthetic process
B0006166biological_processpurine ribonucleoside salvage
B0006178biological_processguanine salvage
B0007625biological_processgrooming behavior
B0007626biological_processlocomotory behavior
B0016757molecular_functionglycosyltransferase activity
B0021756biological_processstriatum development
B0021895biological_processcerebral cortex neuron differentiation
B0021954biological_processcentral nervous system neuron development
B0032263biological_processGMP salvage
B0032264biological_processIMP salvage
B0042417biological_processdopamine metabolic process
B0042802molecular_functionidentical protein binding
B0043103biological_processhypoxanthine salvage
B0044209biological_processAMP salvage
B0045964biological_processpositive regulation of dopamine metabolic process
B0046038biological_processGMP catabolic process
B0046040biological_processIMP metabolic process
B0046083biological_processadenine metabolic process
B0046100biological_processhypoxanthine metabolic process
B0046651biological_processlymphocyte proliferation
B0046872molecular_functionmetal ion binding
B0048813biological_processdendrite morphogenesis
B0051289biological_processprotein homotetramerization
B0052657molecular_functionguanine phosphoribosyltransferase activity
B0070062cellular_componentextracellular exosome
B0071542biological_processdopaminergic neuron differentiation
C0000166molecular_functionnucleotide binding
C0000287molecular_functionmagnesium ion binding
C0001913biological_processT cell mediated cytotoxicity
C0001975biological_processresponse to amphetamine
C0004422molecular_functionhypoxanthine phosphoribosyltransferase activity
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006164biological_processpurine nucleotide biosynthetic process
C0006166biological_processpurine ribonucleoside salvage
C0006178biological_processguanine salvage
C0007625biological_processgrooming behavior
C0007626biological_processlocomotory behavior
C0016757molecular_functionglycosyltransferase activity
C0021756biological_processstriatum development
C0021895biological_processcerebral cortex neuron differentiation
C0021954biological_processcentral nervous system neuron development
C0032263biological_processGMP salvage
C0032264biological_processIMP salvage
C0042417biological_processdopamine metabolic process
C0042802molecular_functionidentical protein binding
C0043103biological_processhypoxanthine salvage
C0044209biological_processAMP salvage
C0045964biological_processpositive regulation of dopamine metabolic process
C0046038biological_processGMP catabolic process
C0046040biological_processIMP metabolic process
C0046083biological_processadenine metabolic process
C0046100biological_processhypoxanthine metabolic process
C0046651biological_processlymphocyte proliferation
C0046872molecular_functionmetal ion binding
C0048813biological_processdendrite morphogenesis
C0051289biological_processprotein homotetramerization
C0052657molecular_functionguanine phosphoribosyltransferase activity
C0070062cellular_componentextracellular exosome
C0071542biological_processdopaminergic neuron differentiation
D0000166molecular_functionnucleotide binding
D0000287molecular_functionmagnesium ion binding
D0001913biological_processT cell mediated cytotoxicity
D0001975biological_processresponse to amphetamine
D0004422molecular_functionhypoxanthine phosphoribosyltransferase activity
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0006164biological_processpurine nucleotide biosynthetic process
D0006166biological_processpurine ribonucleoside salvage
D0006178biological_processguanine salvage
D0007625biological_processgrooming behavior
D0007626biological_processlocomotory behavior
D0016757molecular_functionglycosyltransferase activity
D0021756biological_processstriatum development
D0021895biological_processcerebral cortex neuron differentiation
D0021954biological_processcentral nervous system neuron development
D0032263biological_processGMP salvage
D0032264biological_processIMP salvage
D0042417biological_processdopamine metabolic process
D0042802molecular_functionidentical protein binding
D0043103biological_processhypoxanthine salvage
D0044209biological_processAMP salvage
D0045964biological_processpositive regulation of dopamine metabolic process
D0046038biological_processGMP catabolic process
D0046040biological_processIMP metabolic process
D0046083biological_processadenine metabolic process
D0046100biological_processhypoxanthine metabolic process
D0046651biological_processlymphocyte proliferation
D0046872molecular_functionmetal ion binding
D0048813biological_processdendrite morphogenesis
D0051289biological_processprotein homotetramerization
D0052657molecular_functionguanine phosphoribosyltransferase activity
D0070062cellular_componentextracellular exosome
D0071542biological_processdopaminergic neuron differentiation
E0000166molecular_functionnucleotide binding
E0000287molecular_functionmagnesium ion binding
E0001913biological_processT cell mediated cytotoxicity
E0001975biological_processresponse to amphetamine
E0004422molecular_functionhypoxanthine phosphoribosyltransferase activity
E0005515molecular_functionprotein binding
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0006164biological_processpurine nucleotide biosynthetic process
E0006166biological_processpurine ribonucleoside salvage
E0006178biological_processguanine salvage
E0007625biological_processgrooming behavior
E0007626biological_processlocomotory behavior
E0016757molecular_functionglycosyltransferase activity
E0021756biological_processstriatum development
E0021895biological_processcerebral cortex neuron differentiation
E0021954biological_processcentral nervous system neuron development
E0032263biological_processGMP salvage
E0032264biological_processIMP salvage
E0042417biological_processdopamine metabolic process
E0042802molecular_functionidentical protein binding
E0043103biological_processhypoxanthine salvage
E0044209biological_processAMP salvage
E0045964biological_processpositive regulation of dopamine metabolic process
E0046038biological_processGMP catabolic process
E0046040biological_processIMP metabolic process
E0046083biological_processadenine metabolic process
E0046100biological_processhypoxanthine metabolic process
E0046651biological_processlymphocyte proliferation
E0046872molecular_functionmetal ion binding
E0048813biological_processdendrite morphogenesis
E0051289biological_processprotein homotetramerization
E0052657molecular_functionguanine phosphoribosyltransferase activity
E0070062cellular_componentextracellular exosome
E0071542biological_processdopaminergic neuron differentiation
F0000166molecular_functionnucleotide binding
F0000287molecular_functionmagnesium ion binding
F0001913biological_processT cell mediated cytotoxicity
F0001975biological_processresponse to amphetamine
F0004422molecular_functionhypoxanthine phosphoribosyltransferase activity
F0005515molecular_functionprotein binding
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0006164biological_processpurine nucleotide biosynthetic process
F0006166biological_processpurine ribonucleoside salvage
F0006178biological_processguanine salvage
F0007625biological_processgrooming behavior
F0007626biological_processlocomotory behavior
F0016757molecular_functionglycosyltransferase activity
F0021756biological_processstriatum development
F0021895biological_processcerebral cortex neuron differentiation
F0021954biological_processcentral nervous system neuron development
F0032263biological_processGMP salvage
F0032264biological_processIMP salvage
F0042417biological_processdopamine metabolic process
F0042802molecular_functionidentical protein binding
F0043103biological_processhypoxanthine salvage
F0044209biological_processAMP salvage
F0045964biological_processpositive regulation of dopamine metabolic process
F0046038biological_processGMP catabolic process
F0046040biological_processIMP metabolic process
F0046083biological_processadenine metabolic process
F0046100biological_processhypoxanthine metabolic process
F0046651biological_processlymphocyte proliferation
F0046872molecular_functionmetal ion binding
F0048813biological_processdendrite morphogenesis
F0051289biological_processprotein homotetramerization
F0052657molecular_functionguanine phosphoribosyltransferase activity
F0070062cellular_componentextracellular exosome
F0071542biological_processdopaminergic neuron differentiation
G0000166molecular_functionnucleotide binding
G0000287molecular_functionmagnesium ion binding
G0001913biological_processT cell mediated cytotoxicity
G0001975biological_processresponse to amphetamine
G0004422molecular_functionhypoxanthine phosphoribosyltransferase activity
G0005515molecular_functionprotein binding
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0006164biological_processpurine nucleotide biosynthetic process
G0006166biological_processpurine ribonucleoside salvage
G0006178biological_processguanine salvage
G0007625biological_processgrooming behavior
G0007626biological_processlocomotory behavior
G0016757molecular_functionglycosyltransferase activity
G0021756biological_processstriatum development
G0021895biological_processcerebral cortex neuron differentiation
G0021954biological_processcentral nervous system neuron development
G0032263biological_processGMP salvage
G0032264biological_processIMP salvage
G0042417biological_processdopamine metabolic process
G0042802molecular_functionidentical protein binding
G0043103biological_processhypoxanthine salvage
G0044209biological_processAMP salvage
G0045964biological_processpositive regulation of dopamine metabolic process
G0046038biological_processGMP catabolic process
G0046040biological_processIMP metabolic process
G0046083biological_processadenine metabolic process
G0046100biological_processhypoxanthine metabolic process
G0046651biological_processlymphocyte proliferation
G0046872molecular_functionmetal ion binding
G0048813biological_processdendrite morphogenesis
G0051289biological_processprotein homotetramerization
G0052657molecular_functionguanine phosphoribosyltransferase activity
G0070062cellular_componentextracellular exosome
G0071542biological_processdopaminergic neuron differentiation
H0000166molecular_functionnucleotide binding
H0000287molecular_functionmagnesium ion binding
H0001913biological_processT cell mediated cytotoxicity
H0001975biological_processresponse to amphetamine
H0004422molecular_functionhypoxanthine phosphoribosyltransferase activity
H0005515molecular_functionprotein binding
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0006164biological_processpurine nucleotide biosynthetic process
H0006166biological_processpurine ribonucleoside salvage
H0006178biological_processguanine salvage
H0007625biological_processgrooming behavior
H0007626biological_processlocomotory behavior
H0016757molecular_functionglycosyltransferase activity
H0021756biological_processstriatum development
H0021895biological_processcerebral cortex neuron differentiation
H0021954biological_processcentral nervous system neuron development
H0032263biological_processGMP salvage
H0032264biological_processIMP salvage
H0042417biological_processdopamine metabolic process
H0042802molecular_functionidentical protein binding
H0043103biological_processhypoxanthine salvage
H0044209biological_processAMP salvage
H0045964biological_processpositive regulation of dopamine metabolic process
H0046038biological_processGMP catabolic process
H0046040biological_processIMP metabolic process
H0046083biological_processadenine metabolic process
H0046100biological_processhypoxanthine metabolic process
H0046651biological_processlymphocyte proliferation
H0046872molecular_functionmetal ion binding
H0048813biological_processdendrite morphogenesis
H0051289biological_processprotein homotetramerization
H0052657molecular_functionguanine phosphoribosyltransferase activity
H0070062cellular_componentextracellular exosome
H0071542biological_processdopaminergic neuron differentiation
Functional Information from PDB Data
site_idAC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 3L5 A 301
ChainResidue
ALYS68
ALYS165
ALYS185
APHE186
AVAL187
AASP193
AARG199
AHOH402
AHOH446
AGLY69
AILE135
AILE136
AASP137
ATHR138
AGLY139
ALYS140
ATHR141

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 302
ChainResidue
AGLU133
AILE135
ATHR141

site_idAC3
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 3L5 B 301
ChainResidue
BILE135
BASP137
BTHR138
BGLY139
BLYS140
BTHR141
BLYS165
BLYS185
BPHE186
BVAL187
BASP193
BMG303
BHOH406
BHOH420
BHOH463
BHOH475
BHOH484

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 302
ChainResidue
BGLU133
BASP134
BILE135
BTHR141

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 303
ChainResidue
BASP193
B3L5301
BHOH463
BHOH471
BHOH484

site_idAC6
Number of Residues22
DetailsBINDING SITE FOR RESIDUE 3L5 C 301
ChainResidue
CLYS68
CGLY69
CASP134
CILE135
CASP137
CTHR138
CGLY139
CLYS140
CTHR141
CLYS165
CLYS185
CPHE186
CVAL187
CALA191
CLEU192
CASP193
CARG199
CHOH418
CHOH439
CHOH466
CHOH468
CHOH470

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG C 302
ChainResidue
CGLU133
CASP134
CHOH466
CHOH467
CHOH468
CHOH469

site_idAC8
Number of Residues24
DetailsBINDING SITE FOR RESIDUE 3L5 D 301
ChainResidue
DLEU67
DLYS68
DGLY69
DASP134
DILE135
DASP137
DTHR138
DGLY139
DLYS140
DTHR141
DLYS165
DLYS185
DPHE186
DVAL187
DASP193
DARG199
DMG302
DHOH427
DHOH456
DHOH466
DHOH475
DHOH478
DHOH492
DHOH493

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 302
ChainResidue
DASP134
D3L5301
DHOH492
DHOH493
DHOH494
DGLU133

site_idBC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE 3L5 E 301
ChainResidue
ELYS68
EGLY69
EASP134
EILE135
EASP137
ETHR138
EGLY139
ELYS140
ETHR141
ELYS165
ELYS185
EPHE186
EVAL187
EASP193
EARG199
EHOH415
EHOH427
EHOH439
EHOH440

site_idBC2
Number of Residues25
DetailsBINDING SITE FOR RESIDUE 3L5 F 301
ChainResidue
FLYS102
FSER103
FILE135
FASP137
FTHR138
FGLY139
FLYS140
FTHR141
FLYS165
FLYS185
FPHE186
FVAL187
FASP193
FMG302
FMG303
FHOH406
FHOH412
FHOH414
FHOH423
FHOH427
FHOH429
FHOH432
FHOH437
FHOH461
FHOH467

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG F 302
ChainResidue
FGLU133
FASP134
FILE135
FTHR141
F3L5301
FHOH472

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG F 303
ChainResidue
FASP193
F3L5301
FHOH437
FHOH488

site_idBC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE 3L5 G 301
ChainResidue
GILE135
GILE136
GASP137
GTHR138
GGLY139
GLYS140
GTHR141
GLYS165
GLYS185
GPHE186
GVAL187
GASP193
GMG302

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG G 302
ChainResidue
GGLU133
GASP134
G3L5301
GHOH433
GHOH435

site_idBC7
Number of Residues21
DetailsBINDING SITE FOR RESIDUE 3L5 H 301
ChainResidue
HLYS68
HGLY69
HARG100
HILE135
HASP137
HTHR138
HGLY139
HLYS140
HTHR141
HLYS165
HLYS185
HPHE186
HVAL187
HASP193
HARG199
HMG302
HHOH420
HHOH423
HHOH436
HHOH449
HHOH451

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG H 302
ChainResidue
HGLU133
HASP134
H3L5301
HHOH406
HHOH449
HHOH451

Functional Information from PROSITE/UniProt
site_idPS00103
Number of Residues13
DetailsPUR_PYR_PR_TRANSFER Purine/pyrimidine phosphoribosyl transferases signature. VLIVEDIIDTGkT
ChainResidueDetails
AVAL129-THR141

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsACT_SITE: Proton acceptor => ECO:0000305
ChainResidueDetails
AASP137
BASP137
CASP137
DASP137
EASP137
FASP137
GASP137
HASP137

site_idSWS_FT_FI2
Number of Residues32
DetailsBINDING: BINDING => ECO:0000269|PubMed:8044844
ChainResidueDetails
CLYS68
CGLU133
CLYS165
CLYS185
DLYS68
DGLU133
DLYS165
DLYS185
ELYS68
EGLU133
ELYS165
ELYS185
FLYS68
FGLU133
FLYS165
FLYS185
GLYS68
GGLU133
GLYS165
GLYS185
HLYS68
HGLU133
HLYS165
HLYS185
ALYS68
AGLU133
ALYS165
ALYS185
BLYS68
BGLU133
BLYS165
BLYS185

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING:
ChainResidueDetails
AASP193
BASP193
CASP193
DASP193
EASP193
FASP193
GASP193
HASP193

site_idSWS_FT_FI4
Number of Residues8
DetailsMOD_RES: N-acetylalanine => ECO:0000269|PubMed:7107641
ChainResidueDetails
EALA1
FALA1
GALA1
HALA1
AALA1
BALA1
CALA1
DALA1

site_idSWS_FT_FI5
Number of Residues8
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P00493
ChainResidueDetails
DLYS102
ELYS102
FLYS102
GLYS102
ALYS102
BLYS102
CLYS102
HLYS102

site_idSWS_FT_FI6
Number of Residues8
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:P27605
ChainResidueDetails
DTHR141
ETHR141
FTHR141
GTHR141
ATHR141
BTHR141
CTHR141
HTHR141

site_idSWS_FT_FI7
Number of Residues16
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733
ChainResidueDetails
ELYS114
FLYS114
GLYS114
HLYS114
ALYS114
BLYS114
CLYS114
DLYS114

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 48
ChainResidueDetails
AGLU133attractive charge-charge interaction, electrostatic stabiliser
AASP134attractive charge-charge interaction, electrostatic stabiliser
AASP137hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
APHE186electrostatic stabiliser
AARG199electrostatic stabiliser

site_idMCSA2
Number of Residues5
DetailsM-CSA 48
ChainResidueDetails
BGLU133attractive charge-charge interaction, electrostatic stabiliser
BASP134attractive charge-charge interaction, electrostatic stabiliser
BASP137hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BPHE186electrostatic stabiliser
BARG199electrostatic stabiliser

site_idMCSA3
Number of Residues5
DetailsM-CSA 48
ChainResidueDetails
CGLU133attractive charge-charge interaction, electrostatic stabiliser
CASP134attractive charge-charge interaction, electrostatic stabiliser
CASP137hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
CPHE186electrostatic stabiliser
CARG199electrostatic stabiliser

site_idMCSA4
Number of Residues5
DetailsM-CSA 48
ChainResidueDetails
DGLU133attractive charge-charge interaction, electrostatic stabiliser
DASP134attractive charge-charge interaction, electrostatic stabiliser
DASP137hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
DPHE186electrostatic stabiliser
DARG199electrostatic stabiliser

site_idMCSA5
Number of Residues5
DetailsM-CSA 48
ChainResidueDetails
EGLU133attractive charge-charge interaction, electrostatic stabiliser
EASP134attractive charge-charge interaction, electrostatic stabiliser
EASP137hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
EPHE186electrostatic stabiliser
EARG199electrostatic stabiliser

site_idMCSA6
Number of Residues5
DetailsM-CSA 48
ChainResidueDetails
FGLU133attractive charge-charge interaction, electrostatic stabiliser
FASP134attractive charge-charge interaction, electrostatic stabiliser
FASP137hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
FPHE186electrostatic stabiliser
FARG199electrostatic stabiliser

site_idMCSA7
Number of Residues5
DetailsM-CSA 48
ChainResidueDetails
GGLU133attractive charge-charge interaction, electrostatic stabiliser
GASP134attractive charge-charge interaction, electrostatic stabiliser
GASP137hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
GPHE186electrostatic stabiliser
GARG199electrostatic stabiliser

site_idMCSA8
Number of Residues5
DetailsM-CSA 48
ChainResidueDetails
HGLU133attractive charge-charge interaction, electrostatic stabiliser
HASP134attractive charge-charge interaction, electrostatic stabiliser
HASP137hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
HPHE186electrostatic stabiliser
HARG199electrostatic stabiliser

221051

PDB entries from 2024-06-12

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