4O4R
Murine Norovirus RdRp in complex with PPNDS
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003723 | molecular_function | RNA binding |
A | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
A | 0004386 | molecular_function | helicase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0006351 | biological_process | DNA-templated transcription |
A | 0039694 | biological_process | viral RNA genome replication |
B | 0003723 | molecular_function | RNA binding |
B | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
B | 0004386 | molecular_function | helicase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0006351 | biological_process | DNA-templated transcription |
B | 0039694 | biological_process | viral RNA genome replication |
C | 0003723 | molecular_function | RNA binding |
C | 0003968 | molecular_function | RNA-dependent RNA polymerase activity |
C | 0004386 | molecular_function | helicase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0006351 | biological_process | DNA-templated transcription |
C | 0039694 | biological_process | viral RNA genome replication |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE 20V A 601 |
Chain | Residue |
A | MET219 |
A | HOH718 |
A | MET221 |
A | TYR341 |
A | LEU391 |
A | ARG392 |
A | ARG393 |
A | GLN414 |
A | LYS419 |
A | 20V602 |
site_id | AC2 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE 20V A 602 |
Chain | Residue |
A | PHE29 |
A | LYS166 |
A | LEU169 |
A | TYR341 |
A | ARG392 |
A | SER410 |
A | ARG413 |
A | GLN414 |
A | LYS419 |
A | 20V601 |
A | HOH718 |
A | HOH724 |
A | HOH896 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A 603 |
Chain | Residue |
A | GLY48 |
A | SER49 |
A | SER58 |
A | LEU59 |
A | HOH733 |
A | HOH745 |
A | HOH779 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 A 604 |
Chain | Residue |
A | MET360 |
A | ARG363 |
A | HOH713 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 605 |
Chain | Residue |
A | THR117 |
A | LYS127 |
A | MET192 |
A | HOH771 |
A | HOH773 |
site_id | AC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 A 606 |
Chain | Residue |
A | GLN61 |
A | ARG64 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 607 |
Chain | Residue |
A | LYS68 |
A | SO4608 |
A | HOH937 |
A | HOH958 |
A | HOH968 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A 608 |
Chain | Residue |
A | THR8 |
A | ALA10 |
A | GLY11 |
A | LYS68 |
A | SO4607 |
A | HOH720 |
A | HOH958 |
site_id | AC9 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE 20V B 601 |
Chain | Residue |
B | MET219 |
B | MET221 |
B | TYR341 |
B | LEU391 |
B | ARG392 |
B | ARG393 |
B | LEU406 |
B | GLN414 |
B | LYS419 |
B | 20V602 |
site_id | BC1 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE 20V B 602 |
Chain | Residue |
B | MET28 |
B | PHE29 |
B | LEU169 |
B | TYR341 |
B | ARG392 |
B | SER410 |
B | ARG413 |
B | GLN414 |
B | LYS419 |
B | 20V601 |
B | HOH724 |
site_id | BC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 B 603 |
Chain | Residue |
B | GLY48 |
B | SER49 |
B | SER58 |
B | LEU59 |
B | HOH762 |
B | HOH774 |
B | HOH782 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 B 604 |
Chain | Residue |
B | THR8 |
B | ALA10 |
B | GLY11 |
B | SO4605 |
site_id | BC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 B 605 |
Chain | Residue |
B | SO4604 |
B | HOH701 |
B | HOH936 |
site_id | BC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 B 606 |
Chain | Residue |
B | ASP407 |
B | ARG408 |
B | HIS450 |
site_id | BC6 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE 20V C 601 |
Chain | Residue |
C | HOH863 |
C | MET219 |
C | MET221 |
C | TYR341 |
C | LEU391 |
C | ARG392 |
C | ARG393 |
C | GLN414 |
C | LYS419 |
C | 20V602 |
site_id | BC7 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE 20V C 602 |
Chain | Residue |
C | PHE29 |
C | LYS166 |
C | LEU169 |
C | TYR341 |
C | ARG392 |
C | SER410 |
C | ARG413 |
C | GLN414 |
C | LYS419 |
C | 20V601 |
C | HOH720 |
C | HOH795 |
C | HOH893 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21471315, ECO:0000269|PubMed:22341781, ECO:0000269|PubMed:24622391 |
Chain | Residue | Details |
A | ASP240 | |
A | GLU345 | |
B | ASP240 | |
B | GLU345 | |
C | ASP240 | |
C | GLU345 |
site_id | SWS_FT_FI2 |
Number of Residues | 3 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21471315 |
Chain | Residue | Details |
A | ASP242 | |
B | ASP242 | |
C | ASP242 |
site_id | SWS_FT_FI3 |
Number of Residues | 3 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21471315, ECO:0000269|PubMed:24622391 |
Chain | Residue | Details |
A | ASP344 | |
B | ASP344 | |
C | ASP344 |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | BINDING: BINDING => ECO:0000269|PubMed:22341781, ECO:0000269|PubMed:24622391 |
Chain | Residue | Details |
A | SER389 | |
B | SER389 | |
C | SER389 |