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4MNW

Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK749

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 301
ChainResidue
ALYS61
AHIS100
ATHR177
ALYS179
AMET180
AGOL306
AHOH518
AHOH550

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 302
ChainResidue
AHIS165
AARG166
AARG206
AHOH549
ASER164

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 303
ChainResidue
ATHR23
ASER71
AARG72
ATHR77
AGLN154
AHOH523
BGLN1
BCYS2
BTRP3

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 304
ChainResidue
AHIS165
AGLN169
ATHR177
ATHR178
AHOH518
AHOH550

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 305
ChainResidue
AARG35
AHIS37
AARG37
ALYS187

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 306
ChainResidue
AHIS99
AHIS100
AASN101
AASP102
ALYS179
AMET180
ASER214
ATRP215
ATHR229
ASO4301

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 307
ChainResidue
ATRP186
ALYS187
AALA221
AHOH515

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 308
ChainResidue
ASER125
AMET126
AARG239

site_idAC9
Number of Residues44
DetailsBINDING SITE FOR BICYCLIC PEPTIDE UK749
ChainResidue
AGLU20
APHE21
ATHR22
ATHR23
AARG35
AVAL41
AHIS57
ACYS58
AASP60
ATYR60
ATYR64
AARG72
ALEU97
AHIS99
AGLU144
AGLN154
AGLN169
ASER174
AASP189
ASER190
AGLN192
AGLY193
ASER195
ATRP215
AGLY216
AARG217
AGLY218
ALYS224
AGLY226
AGOL303
AHOH404
AHOH442
AHOH466
AHOH526
AHOH530
BHOH201
BHOH202
BHOH203
BHOH204
BHOH205
BHOH206
BHOH207
BHOH208
BHOH209

Functional Information from PROSITE/UniProt
site_idPS00134
Number of Residues6
DetailsTRYPSIN_HIS Serine proteases, trypsin family, histidine active site. ISATHC
ChainResidueDetails
AILE53-CYS58

site_idPS00135
Number of Residues12
DetailsTRYPSIN_SER Serine proteases, trypsin family, serine active site. DScqGDSGGPLV
ChainResidueDetails
AASP189-VAL200

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Charge relay system
ChainResidueDetails
AHIS57
AASP102
ASER195

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:9151681
ChainResidueDetails
ASER146

site_idSWS_FT_FI3
Number of Residues1
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine
ChainResidueDetails
AGLN145

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PDB entries from 2024-06-12

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