Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4LF2

Hexameric Form II RuBisCO from Rhodopseudomonas palustris, activated and complexed with sulfate and magnesium

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0004497	molecular_function	monooxygenase activity
A	0015977	biological_process	carbon fixation
A	0015979	biological_process	photosynthesis
A	0016829	molecular_function	lyase activity
A	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
A	0019253	biological_process	reductive pentose-phosphate cycle
A	0046872	molecular_function	metal ion binding
B	0000287	molecular_function	magnesium ion binding
B	0004497	molecular_function	monooxygenase activity
B	0015977	biological_process	carbon fixation
B	0015979	biological_process	photosynthesis
B	0016829	molecular_function	lyase activity
B	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
B	0019253	biological_process	reductive pentose-phosphate cycle
B	0046872	molecular_function	metal ion binding
C	0000287	molecular_function	magnesium ion binding
C	0004497	molecular_function	monooxygenase activity
C	0015977	biological_process	carbon fixation
C	0015979	biological_process	photosynthesis
C	0016829	molecular_function	lyase activity
C	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
C	0019253	biological_process	reductive pentose-phosphate cycle
C	0046872	molecular_function	metal ion binding
D	0000287	molecular_function	magnesium ion binding
D	0004497	molecular_function	monooxygenase activity
D	0015977	biological_process	carbon fixation
D	0015979	biological_process	photosynthesis
D	0016829	molecular_function	lyase activity
D	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
D	0019253	biological_process	reductive pentose-phosphate cycle
D	0046872	molecular_function	metal ion binding
E	0000287	molecular_function	magnesium ion binding
E	0004497	molecular_function	monooxygenase activity
E	0015977	biological_process	carbon fixation
E	0015979	biological_process	photosynthesis
E	0016829	molecular_function	lyase activity
E	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
E	0019253	biological_process	reductive pentose-phosphate cycle
E	0046872	molecular_function	metal ion binding
F	0000287	molecular_function	magnesium ion binding
F	0004497	molecular_function	monooxygenase activity
F	0015977	biological_process	carbon fixation
F	0015979	biological_process	photosynthesis
F	0016829	molecular_function	lyase activity
F	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
F	0019253	biological_process	reductive pentose-phosphate cycle
F	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 601

Chain	Residue
A	LYS167
A	KCX192
A	ASP194
A	GLU195
B	ASN112
B	HOH828

site_id	AC2
Number of Residues	8
Details	BINDING SITE FOR RESIDUE SO4 A 602

Chain	Residue
A	SER369
A	HOH701
A	HOH702
A	HOH911
B	HOH847
A	ARG289
A	HIS322
A	MET331

site_id	AC3
Number of Residues	9
Details	BINDING SITE FOR RESIDUE SO4 A 603

Chain	Residue
A	ILE165
A	LYS167
A	LYS330
A	GLY371
A	GLY394
A	GLY395
A	HOH788
A	HOH813
B	THR54

site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CO3 A 604

Chain	Residue
A	GLU346
A	HIS386
A	ASN388

site_id	AC5
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG B 601

Chain	Residue
A	ASN112
A	HOH938
A	HOH939
B	LYS167
B	KCX192
B	ASP194
B	GLU195

site_id	AC6
Number of Residues	8
Details	BINDING SITE FOR RESIDUE SO4 B 602

Chain	Residue
A	HOH827
B	ARG289
B	HIS322
B	GLY324
B	SER369
B	HOH701
B	HOH702
B	HOH857

site_id	AC7
Number of Residues	8
Details	BINDING SITE FOR RESIDUE SO4 B 603

Chain	Residue
A	THR54
B	ILE165
B	LYS167
B	LYS330
B	GLY371
B	GLY394
B	GLY395
B	HOH863

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CO3 B 604

Chain	Residue
B	GLU346
B	ASN388
B	HOH805

site_id	AC9
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG C 601

Chain	Residue
C	LYS167
C	LYS169
C	KCX192
C	ASP194
C	GLU195
D	ASN112
D	HOH945

site_id	BC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 C 602

Chain	Residue
C	ARG289
C	HIS322
C	SER369
C	HOH701
C	HOH702
C	HOH935

site_id	BC2
Number of Residues	8
Details	BINDING SITE FOR RESIDUE SO4 C 603

Chain	Residue
C	LYS167
C	LYS330
C	GLY370
C	GLY371
C	GLY394
C	GLY395
D	THR54
D	ASN55

site_id	BC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CO3 C 604

Chain	Residue
C	GLU346
C	ASN388
C	HOH927

site_id	BC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG D 601

Chain	Residue
C	ASN112
C	HOH953
D	KCX192
D	ASP194
D	GLU195
D	HOH944

site_id	BC5
Number of Residues	8
Details	BINDING SITE FOR RESIDUE SO4 D 602

Chain	Residue
C	HOH869
D	ARG289
D	HIS322
D	SER369
D	HOH701
D	HOH702
D	HOH776
D	HOH777

site_id	BC6
Number of Residues	9
Details	BINDING SITE FOR RESIDUE SO4 D 603

Chain	Residue
C	THR54
D	ILE165
D	LYS167
D	LYS330
D	GLY370
D	GLY371
D	GLY394
D	GLY395
D	HOH944

site_id	BC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 E 701

Chain	Residue
E	ARG289
E	HIS292
E	HIS322
E	MET331
E	HOH801
E	HOH940

site_id	BC8
Number of Residues	8
Details	BINDING SITE FOR RESIDUE SO4 E 702

Chain	Residue
E	LYS167
E	LYS330
E	GLY370
E	GLY371
E	GLY394
E	GLY395
E	HOH981
F	THR54

site_id	BC9
Number of Residues	8
Details	BINDING SITE FOR RESIDUE SO4 F 701

Chain	Residue
E	HOH997
F	ARG289
F	HIS292
F	HIS322
F	MET331
F	HOH874
F	HOH904
F	HOH940

site_id	CC1
Number of Residues	8
Details	BINDING SITE FOR RESIDUE SO4 F 702

Chain	Residue
E	THR54
E	ASN55
F	LYS167
F	LYS330
F	GLY371
F	GLY394
F	GLY395
F	HOH980

Functional Information from PROSITE/UniProt

site_id	PS00157
Number of Residues	9
Details	RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GgDFiKnDE

Chain	Residue	Details
A	GLY187-GLU195

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	12
Details	ACT_SITE: Proton acceptor => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	LYS167
A	HIS288
B	LYS167
B	HIS288
C	LYS167
C	HIS288
D	LYS167
D	HIS288
E	LYS167
E	HIS288
F	LYS167
F	HIS288

site_id	SWS_FT_FI2
Number of Residues	6
Details	BINDING: in homodimeric partner => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	ASN112
B	ASN112
C	ASN112
D	ASN112
E	ASN112
F	ASN112

site_id	SWS_FT_FI3
Number of Residues	36
Details	BINDING: BINDING => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
C	LYS169
C	ASP194
C	GLU195
C	ARG289
C	HIS322
C	SER369
D	LYS169
D	ASP194
D	GLU195
D	ARG289
D	HIS322
D	SER369
E	LYS169
E	ASP194
E	GLU195
E	ARG289
E	HIS322
E	SER369
F	LYS169
F	ASP194
F	GLU195
F	ARG289
F	HIS322
F	SER369
A	LYS169
A	ASP194
A	GLU195
A	ARG289
A	HIS322
A	SER369
B	LYS169
B	ASP194
B	GLU195
B	ARG289
B	HIS322
B	SER369

site_id	SWS_FT_FI4
Number of Residues	6
Details	BINDING: via carbamate group => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	KCX192
B	KCX192
C	KCX192
D	KCX192
E	KCX192
F	KCX192

site_id	SWS_FT_FI5
Number of Residues	6
Details	SITE: Transition state stabilizer => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	LYS330
B	LYS330
C	LYS330
D	LYS330
E	LYS330
F	LYS330

site_id	SWS_FT_FI6
Number of Residues	6
Details	MOD_RES: N6-carboxylysine => ECO:0000255\|HAMAP-Rule:MF_01339

Chain	Residue	Details
A	KCX192
B	KCX192
C	KCX192
D	KCX192
E	KCX192
F	KCX192

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)