4JCO
1.7 A resolution structure of wild type malate dehydrogenase from haloarcula marismortui
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0004459 | molecular_function | L-lactate dehydrogenase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006089 | biological_process | lactate metabolic process |
| A | 0006090 | biological_process | pyruvate metabolic process |
| A | 0006099 | biological_process | tricarboxylic acid cycle |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| A | 0019752 | biological_process | carboxylic acid metabolic process |
| A | 0030060 | molecular_function | L-malate dehydrogenase activity |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0004459 | molecular_function | L-lactate dehydrogenase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006089 | biological_process | lactate metabolic process |
| B | 0006090 | biological_process | pyruvate metabolic process |
| B | 0006099 | biological_process | tricarboxylic acid cycle |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| B | 0019752 | biological_process | carboxylic acid metabolic process |
| B | 0030060 | molecular_function | L-malate dehydrogenase activity |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0004459 | molecular_function | L-lactate dehydrogenase activity |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0006089 | biological_process | lactate metabolic process |
| C | 0006090 | biological_process | pyruvate metabolic process |
| C | 0006099 | biological_process | tricarboxylic acid cycle |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| C | 0019752 | biological_process | carboxylic acid metabolic process |
| C | 0030060 | molecular_function | L-malate dehydrogenase activity |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0004459 | molecular_function | L-lactate dehydrogenase activity |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0006089 | biological_process | lactate metabolic process |
| D | 0006090 | biological_process | pyruvate metabolic process |
| D | 0006099 | biological_process | tricarboxylic acid cycle |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| D | 0019752 | biological_process | carboxylic acid metabolic process |
| D | 0030060 | molecular_function | L-malate dehydrogenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL A 401 |
| Chain | Residue |
| A | LYS205 |
| A | ASP306 |
| D | THR210 |
| D | ASP211 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CL A 402 |
| Chain | Residue |
| A | ARG166 |
| A | HIS256 |
| B | TYR72 |
| B | ASP73 |
| B | HOH537 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE CL A 403 |
| Chain | Residue |
| A | GLY69 |
| A | ILE70 |
| A | ALA71 |
| A | TYR72 |
| A | ASP73 |
| B | ARG166 |
| B | ARG252 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL A 404 |
| Chain | Residue |
| A | HIS68 |
| A | GLY69 |
| B | ARG166 |
| B | GLY249 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE NA A 405 |
| Chain | Residue |
| A | ASP47 |
| C | ASP264 |
| C | HOH818 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA A 406 |
| Chain | Residue |
| A | SER91 |
| A | ASN131 |
| A | ASP132 |
| A | HOH577 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA A 407 |
| Chain | Residue |
| A | TYR150 |
| A | GLU151 |
| A | GLY153 |
| A | HOH592 |
| A | HOH594 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA A 408 |
| Chain | Residue |
| A | GLU247 |
| B | GLU247 |
| B | HOH556 |
| B | HOH773 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA A 409 |
| Chain | Residue |
| A | ASP264 |
| A | HOH715 |
| C | ASP47 |
| C | HOH517 |
| site_id | BC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA A 410 |
| Chain | Residue |
| A | ASN67 |
| A | THR76 |
| A | HOH530 |
| B | TYR174 |
| B | HOH591 |
| site_id | BC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL B 401 |
| Chain | Residue |
| B | LYS205 |
| B | ASP306 |
| C | THR210 |
| C | ASP211 |
| site_id | BC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 402 |
| Chain | Residue |
| B | ARG171 |
| B | HOH542 |
| B | HOH602 |
| site_id | BC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NA B 403 |
| Chain | Residue |
| A | VAL184 |
| A | HOH754 |
| B | ILE70 |
| B | SER74 |
| B | ASN75 |
| B | THR76 |
| B | HOH701 |
| site_id | BC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA B 404 |
| Chain | Residue |
| B | SER91 |
| B | ASP132 |
| B | HOH783 |
| B | HOH785 |
| B | HOH832 |
| site_id | BC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA B 405 |
| Chain | Residue |
| B | GLY196 |
| B | GLN199 |
| B | HOH604 |
| B | HOH724 |
| B | HOH805 |
| B | HOH858 |
| site_id | BC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA B 406 |
| Chain | Residue |
| B | ASP264 |
| B | HOH642 |
| D | ASP47 |
| D | HOH787 |
| site_id | BC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA B 407 |
| Chain | Residue |
| B | GLU151 |
| B | GLY153 |
| B | HOH800 |
| B | HOH821 |
| B | HOH854 |
| site_id | BC9 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE CL C 401 |
| Chain | Residue |
| C | GLY69 |
| C | ILE70 |
| C | ALA71 |
| C | TYR72 |
| C | ASP73 |
| D | ARG166 |
| D | ARG252 |
| site_id | CC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL C 402 |
| Chain | Residue |
| B | THR210 |
| B | ASP211 |
| C | LYS205 |
| C | ASP306 |
| site_id | CC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CL C 403 |
| Chain | Residue |
| C | ARG166 |
| C | ARG252 |
| C | HIS256 |
| D | TYR72 |
| D | ASP73 |
| D | HOH544 |
| site_id | CC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL C 404 |
| Chain | Residue |
| C | ARG171 |
| C | THR246 |
| site_id | CC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA C 405 |
| Chain | Residue |
| C | ASP115 |
| C | HOH530 |
| C | HOH892 |
| C | ASP111 |
| site_id | CC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA C 406 |
| Chain | Residue |
| C | TYR150 |
| C | GLU151 |
| C | GLY153 |
| C | NA407 |
| C | HOH587 |
| C | HOH589 |
| site_id | CC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA C 407 |
| Chain | Residue |
| C | GLU151 |
| C | GLY153 |
| C | NA406 |
| C | NA410 |
| C | HOH698 |
| C | HOH751 |
| site_id | CC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA C 408 |
| Chain | Residue |
| C | SER177 |
| C | GLU178 |
| C | HOH599 |
| C | HOH604 |
| site_id | CC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA C 409 |
| Chain | Residue |
| C | ASP211 |
| C | PRO212 |
| C | GLU219 |
| C | HOH552 |
| C | HOH622 |
| site_id | CC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA C 410 |
| Chain | Residue |
| C | GLY153 |
| C | ASP154 |
| C | NA407 |
| C | HOH752 |
| C | HOH763 |
| site_id | DC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CL D 401 |
| Chain | Residue |
| A | THR210 |
| A | ASP211 |
| A | HOH548 |
| D | LYS205 |
| D | ASP306 |
| site_id | DC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL D 402 |
| Chain | Residue |
| D | ARG171 |
| D | THR246 |
| D | HOH502 |
| D | HOH649 |
| site_id | DC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE CL D 403 |
| Chain | Residue |
| C | ARG166 |
| C | ARG252 |
| D | GLY69 |
| D | ILE70 |
| D | ALA71 |
| D | TYR72 |
| D | ASP73 |
| site_id | DC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA D 404 |
| Chain | Residue |
| D | THR22 |
| D | ILE45 |
| D | HOH520 |
| D | HOH708 |
| site_id | DC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA D 405 |
| Chain | Residue |
| C | HOH599 |
| D | ASN67 |
| D | THR76 |
| D | HOH540 |
| site_id | DC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA D 406 |
| Chain | Residue |
| D | SER91 |
| D | ASP132 |
| D | HOH553 |
| D | HOH554 |
| site_id | DC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA D 407 |
| Chain | Residue |
| D | TYR150 |
| D | GLU151 |
| D | GLY153 |
| D | NA408 |
| D | HOH597 |
| D | HOH806 |
| site_id | DC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA D 408 |
| Chain | Residue |
| D | GLU151 |
| D | GLY153 |
| D | NA407 |
| D | HOH752 |
| D | HOH807 |
| site_id | DC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NA D 409 |
| Chain | Residue |
| D | SER204 |
| D | VAL206 |
| D | ASP211 |
| D | PRO212 |
| D | HOH621 |
| D | HOH629 |
| site_id | EC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE NA D 410 |
| Chain | Residue |
| C | HOH649 |
| C | HOH817 |
| D | THR31 |
| D | ALA35 |
| D | GLU247 |
| site_id | EC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA D 411 |
| Chain | Residue |
| C | HOH733 |
| D | SER177 |
| D | GLU178 |
| D | HOH722 |
| site_id | EC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NA D 412 |
| Chain | Residue |
| D | GLY28 |
| D | GLY30 |
| D | ASP53 |
| D | HOH527 |
| D | HOH533 |
| D | HOH558 |
| D | HOH731 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | ACT_SITE: Proton acceptor => ECO:0000250|UniProtKB:P61889 |
| Chain | Residue | Details |
| A | HIS195 | |
| B | HIS195 | |
| C | HIS195 | |
| D | HIS195 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 16 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:12581646 |
| Chain | Residue | Details |
| B | GLY28 | |
| B | ASP53 | |
| B | ASN116 | |
| B | THR138 | |
| C | GLY28 | |
| C | ASP53 | |
| C | ASN116 | |
| C | THR138 | |
| D | GLY28 | |
| D | ASP53 | |
| D | ASN116 | |
| D | THR138 | |
| A | GLY28 | |
| A | ASP53 | |
| A | ASN116 | |
| A | THR138 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 16 |
| Details | BINDING: BINDING => ECO:0000250|UniProtKB:P61889 |
| Chain | Residue | Details |
| C | ARG102 | |
| C | ARG109 | |
| C | ASN140 | |
| C | ARG171 | |
| D | ARG102 | |
| D | ARG109 | |
| D | ASN140 | |
| D | ARG171 | |
| B | ARG102 | |
| B | ARG109 | |
| B | ASN140 | |
| B | ARG171 | |
| A | ARG102 | |
| A | ARG109 | |
| A | ASN140 | |
| A | ARG171 |
