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4F7U

The 6S snRNP assembly intermediate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000243cellular_componentcommitment complex
A0000387biological_processspliceosomal snRNP assembly
A0000398biological_processmRNA splicing, via spliceosome
A0003723molecular_functionRNA binding
A0005634cellular_componentnucleus
A0005681cellular_componentspliceosomal complex
A0005682cellular_componentU5 snRNP
A0005684cellular_componentU2-type spliceosomal complex
A0005685cellular_componentU1 snRNP
A0005686cellular_componentU2 snRNP
A0005687cellular_componentU4 snRNP
A0005689cellular_componentU12-type spliceosomal complex
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006396biological_processRNA processing
A0006397biological_processmRNA processing
A0008380biological_processRNA splicing
A0034709cellular_componentmethylosome
A0034715cellular_componentpICln-Sm protein complex
A0034719cellular_componentSMN-Sm protein complex
A0043229cellular_componentintracellular organelle
A0046540cellular_componentU4/U6 x U5 tri-snRNP complex
A0071005cellular_componentU2-type precatalytic spliceosome
A0071007cellular_componentU2-type catalytic step 2 spliceosome
A0071011cellular_componentprecatalytic spliceosome
A0071013cellular_componentcatalytic step 2 spliceosome
A0097526cellular_componentspliceosomal tri-snRNP complex
A1990446molecular_functionU1 snRNP binding
B0000387biological_processspliceosomal snRNP assembly
B0000398biological_processmRNA splicing, via spliceosome
B0003723molecular_functionRNA binding
B0005634cellular_componentnucleus
B0005681cellular_componentspliceosomal complex
B0005682cellular_componentU5 snRNP
B0005684cellular_componentU2-type spliceosomal complex
B0005685cellular_componentU1 snRNP
B0005686cellular_componentU2 snRNP
B0005687cellular_componentU4 snRNP
B0005689cellular_componentU12-type spliceosomal complex
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006397biological_processmRNA processing
B0008380biological_processRNA splicing
B0030532cellular_componentsmall nuclear ribonucleoprotein complex
B0034709cellular_componentmethylosome
B0034715cellular_componentpICln-Sm protein complex
B0034719cellular_componentSMN-Sm protein complex
B0046540cellular_componentU4/U6 x U5 tri-snRNP complex
B0071005cellular_componentU2-type precatalytic spliceosome
B0071007cellular_componentU2-type catalytic step 2 spliceosome
B0071011cellular_componentprecatalytic spliceosome
B0071013cellular_componentcatalytic step 2 spliceosome
B1990446molecular_functionU1 snRNP binding
C0000243cellular_componentcommitment complex
C0000387biological_processspliceosomal snRNP assembly
C0000398biological_processmRNA splicing, via spliceosome
C0003723molecular_functionRNA binding
C0005634cellular_componentnucleus
C0005681cellular_componentspliceosomal complex
C0005682cellular_componentU5 snRNP
C0005684cellular_componentU2-type spliceosomal complex
C0005685cellular_componentU1 snRNP
C0005686cellular_componentU2 snRNP
C0005687cellular_componentU4 snRNP
C0005689cellular_componentU12-type spliceosomal complex
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006396biological_processRNA processing
C0006397biological_processmRNA processing
C0008380biological_processRNA splicing
C0034709cellular_componentmethylosome
C0034715cellular_componentpICln-Sm protein complex
C0034719cellular_componentSMN-Sm protein complex
C0043229cellular_componentintracellular organelle
C0046540cellular_componentU4/U6 x U5 tri-snRNP complex
C0071005cellular_componentU2-type precatalytic spliceosome
C0071007cellular_componentU2-type catalytic step 2 spliceosome
C0071011cellular_componentprecatalytic spliceosome
C0071013cellular_componentcatalytic step 2 spliceosome
C0097526cellular_componentspliceosomal tri-snRNP complex
C1990446molecular_functionU1 snRNP binding
D0000387biological_processspliceosomal snRNP assembly
D0000398biological_processmRNA splicing, via spliceosome
D0003723molecular_functionRNA binding
D0005634cellular_componentnucleus
D0005681cellular_componentspliceosomal complex
D0005682cellular_componentU5 snRNP
D0005684cellular_componentU2-type spliceosomal complex
D0005685cellular_componentU1 snRNP
D0005686cellular_componentU2 snRNP
D0005687cellular_componentU4 snRNP
D0005689cellular_componentU12-type spliceosomal complex
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0006397biological_processmRNA processing
D0008380biological_processRNA splicing
D0030532cellular_componentsmall nuclear ribonucleoprotein complex
D0034709cellular_componentmethylosome
D0034715cellular_componentpICln-Sm protein complex
D0034719cellular_componentSMN-Sm protein complex
D0046540cellular_componentU4/U6 x U5 tri-snRNP complex
D0071005cellular_componentU2-type precatalytic spliceosome
D0071007cellular_componentU2-type catalytic step 2 spliceosome
D0071011cellular_componentprecatalytic spliceosome
D0071013cellular_componentcatalytic step 2 spliceosome
D1990446molecular_functionU1 snRNP binding
E0000387biological_processspliceosomal snRNP assembly
E0000398biological_processmRNA splicing, via spliceosome
E0003723molecular_functionRNA binding
E0005634cellular_componentnucleus
E0005681cellular_componentspliceosomal complex
E0005682cellular_componentU5 snRNP
E0005683cellular_componentU7 snRNP
E0005684cellular_componentU2-type spliceosomal complex
E0005685cellular_componentU1 snRNP
E0005686cellular_componentU2 snRNP
E0005687cellular_componentU4 snRNP
E0005689cellular_componentU12-type spliceosomal complex
E0005697cellular_componenttelomerase holoenzyme complex
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0006397biological_processmRNA processing
E0008380biological_processRNA splicing
E0034709cellular_componentmethylosome
E0034715cellular_componentpICln-Sm protein complex
E0034719cellular_componentSMN-Sm protein complex
E0043229cellular_componentintracellular organelle
E0046540cellular_componentU4/U6 x U5 tri-snRNP complex
E0071005cellular_componentU2-type precatalytic spliceosome
E0071007cellular_componentU2-type catalytic step 2 spliceosome
E0071011cellular_componentprecatalytic spliceosome
E0071013cellular_componentcatalytic step 2 spliceosome
E1990446molecular_functionU1 snRNP binding
F0000387biological_processspliceosomal snRNP assembly
F0000398biological_processmRNA splicing, via spliceosome
F0003723molecular_functionRNA binding
F0005634cellular_componentnucleus
F0005681cellular_componentspliceosomal complex
F0005684cellular_componentU2-type spliceosomal complex
F0005685cellular_componentU1 snRNP
F0005687cellular_componentU4 snRNP
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0006397biological_processmRNA processing
F0008380biological_processRNA splicing
F0034709cellular_componentmethylosome
F0034715cellular_componentpICln-Sm protein complex
F0034719cellular_componentSMN-Sm protein complex
F0046540cellular_componentU4/U6 x U5 tri-snRNP complex
F0071005cellular_componentU2-type precatalytic spliceosome
F0071007cellular_componentU2-type catalytic step 2 spliceosome
F0071013cellular_componentcatalytic step 2 spliceosome
F0120114cellular_componentSm-like protein family complex
G0000387biological_processspliceosomal snRNP assembly
G0000398biological_processmRNA splicing, via spliceosome
G0003723molecular_functionRNA binding
G0005634cellular_componentnucleus
G0005654cellular_componentnucleoplasm
G0005681cellular_componentspliceosomal complex
G0005682cellular_componentU5 snRNP
G0005683cellular_componentU7 snRNP
G0005684cellular_componentU2-type spliceosomal complex
G0005685cellular_componentU1 snRNP
G0005686cellular_componentU2 snRNP
G0005687cellular_componentU4 snRNP
G0005689cellular_componentU12-type spliceosomal complex
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0006397biological_processmRNA processing
G0008380biological_processRNA splicing
G0034709cellular_componentmethylosome
G0034719cellular_componentSMN-Sm protein complex
G0043186cellular_componentP granule
G0043229cellular_componentintracellular organelle
G0046540cellular_componentU4/U6 x U5 tri-snRNP complex
G0071004cellular_componentU2-type prespliceosome
G0071005cellular_componentU2-type precatalytic spliceosome
G0071007cellular_componentU2-type catalytic step 2 spliceosome
G0071011cellular_componentprecatalytic spliceosome
G0071013cellular_componentcatalytic step 2 spliceosome
G0097526cellular_componentspliceosomal tri-snRNP complex
G1990446molecular_functionU1 snRNP binding
H0000387biological_processspliceosomal snRNP assembly
H0000398biological_processmRNA splicing, via spliceosome
H0003723molecular_functionRNA binding
H0005634cellular_componentnucleus
H0005681cellular_componentspliceosomal complex
H0005682cellular_componentU5 snRNP
H0005683cellular_componentU7 snRNP
H0005684cellular_componentU2-type spliceosomal complex
H0005685cellular_componentU1 snRNP
H0005686cellular_componentU2 snRNP
H0005687cellular_componentU4 snRNP
H0005689cellular_componentU12-type spliceosomal complex
H0005697cellular_componenttelomerase holoenzyme complex
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0006397biological_processmRNA processing
H0008380biological_processRNA splicing
H0034709cellular_componentmethylosome
H0034715cellular_componentpICln-Sm protein complex
H0034719cellular_componentSMN-Sm protein complex
H0043229cellular_componentintracellular organelle
H0046540cellular_componentU4/U6 x U5 tri-snRNP complex
H0071005cellular_componentU2-type precatalytic spliceosome
H0071007cellular_componentU2-type catalytic step 2 spliceosome
H0071011cellular_componentprecatalytic spliceosome
H0071013cellular_componentcatalytic step 2 spliceosome
H1990446molecular_functionU1 snRNP binding
I0000387biological_processspliceosomal snRNP assembly
I0000398biological_processmRNA splicing, via spliceosome
I0003723molecular_functionRNA binding
I0005634cellular_componentnucleus
I0005681cellular_componentspliceosomal complex
I0005684cellular_componentU2-type spliceosomal complex
I0005685cellular_componentU1 snRNP
I0005687cellular_componentU4 snRNP
I0005737cellular_componentcytoplasm
I0005829cellular_componentcytosol
I0006397biological_processmRNA processing
I0008380biological_processRNA splicing
I0034709cellular_componentmethylosome
I0034715cellular_componentpICln-Sm protein complex
I0034719cellular_componentSMN-Sm protein complex
I0046540cellular_componentU4/U6 x U5 tri-snRNP complex
I0071005cellular_componentU2-type precatalytic spliceosome
I0071007cellular_componentU2-type catalytic step 2 spliceosome
I0071013cellular_componentcatalytic step 2 spliceosome
I0120114cellular_componentSm-like protein family complex
J0000387biological_processspliceosomal snRNP assembly
J0000398biological_processmRNA splicing, via spliceosome
J0003723molecular_functionRNA binding
J0005634cellular_componentnucleus
J0005654cellular_componentnucleoplasm
J0005681cellular_componentspliceosomal complex
J0005682cellular_componentU5 snRNP
J0005683cellular_componentU7 snRNP
J0005684cellular_componentU2-type spliceosomal complex
J0005685cellular_componentU1 snRNP
J0005686cellular_componentU2 snRNP
J0005687cellular_componentU4 snRNP
J0005689cellular_componentU12-type spliceosomal complex
J0005737cellular_componentcytoplasm
J0005829cellular_componentcytosol
J0006397biological_processmRNA processing
J0008380biological_processRNA splicing
J0034709cellular_componentmethylosome
J0034719cellular_componentSMN-Sm protein complex
J0043186cellular_componentP granule
J0043229cellular_componentintracellular organelle
J0046540cellular_componentU4/U6 x U5 tri-snRNP complex
J0071004cellular_componentU2-type prespliceosome
J0071005cellular_componentU2-type precatalytic spliceosome
J0071007cellular_componentU2-type catalytic step 2 spliceosome
J0071011cellular_componentprecatalytic spliceosome
J0071013cellular_componentcatalytic step 2 spliceosome
J0097526cellular_componentspliceosomal tri-snRNP complex
J1990446molecular_functionU1 snRNP binding
P0000387biological_processspliceosomal snRNP assembly
P0005829cellular_componentcytosol
P0005886cellular_componentplasma membrane
P0006821biological_processchloride transport
P0006884biological_processcell volume homeostasis
P0034709cellular_componentmethylosome
P0034715cellular_componentpICln-Sm protein complex
Q0000387biological_processspliceosomal snRNP assembly
Q0005829cellular_componentcytosol
Q0005886cellular_componentplasma membrane
Q0006821biological_processchloride transport
Q0006884biological_processcell volume homeostasis
Q0034709cellular_componentmethylosome
Q0034715cellular_componentpICln-Sm protein complex
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE P6G H 3101
ChainResidue
FTHR4015
FGLY4016
FLYS4017
HPHE3050
HASP3051
HGLU3052
IASN4006

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: N-acetylserine => ECO:0000250|UniProtKB:P62316
ChainResidueDetails
CLYS1086
BSER2002
DSER2002

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P62316
ChainResidueDetails
BSER2009
DSER2009

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:21183079
ChainResidueDetails
BTHR2012
DTHR2012

site_idSWS_FT_FI4
Number of Residues6
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0000250|UniProtKB:P62316
ChainResidueDetails
DLYS2008
BLYS2006
BLYS2008
DLYS2006

219869

PDB entries from 2024-05-15

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