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4DFM

Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in ternary complex with 5-(aminopentinyl)-2-dCTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues22
DetailsBINDING SITE FOR RESIDUE 0L6 A 901
ChainResidue
AARG573
AARG660
ALYS663
APHE667
AASP785
AMG902
AMG903
AEDO906
AHOH1001
AHOH1004
AHOH1006
AASP610
AHOH1190
BDDG112
CDG204
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 902
ChainResidue
AASP610
ATYR611
AASP785
A0L6901
AMG903

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 903
ChainResidue
AASP610
AASP785
A0L6901
AMG902
AHOH1001
AHOH1002

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT A 904
ChainResidue
AGLU337
APRO338
ATYR339
ALYS340
AHOH1184
BDG101

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 905
ChainResidue
AHOH1191
AHOH1192
AHOH1193
AHOH1194
BHOH321
CHOH328

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 906
ChainResidue
AARG573
AGLU615
AGLN754
AALA757
AALA758
AHIS784
A0L6901

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 907
ChainResidue
ALEU352
ALYS354
AASP355
AGLN566
AHOH1016
AHOH1028

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 908
ChainResidue
AGLY396
AGLU397
AGLU404
ALEU408
AARG411
AHOH1156

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 909
ChainResidue
ATHR544
ATYR545
AASN580
AASN583
AHOH1112
CDC209
CHOH326

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 910
ChainResidue
AASP452
AARG593
AARG596
AASP826

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 201
ChainResidue
BHOH302
BHOH304
BHOH308
BHOH319
CHOH318

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-06-12

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