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4DF4

Crystal structure of the large fragment of DNA Polymerase I from Thermus aquaticus in a closed ternary complex with 7-(N-(10-hydroxydecanoyl)-aminopentinyl)-7-deaza-2 -dATP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 901
ChainResidue
AASP610
ATYR611
AASP785
AMG902
A0L3903

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MG A 902
ChainResidue
A0L3903
AHOH1279
AHOH1287
BDOC112
AASP610
AASP785
AGLU786
AMG901

site_idAC3
Number of Residues21
DetailsBINDING SITE FOR RESIDUE 0L3 A 903
ChainResidue
AARG573
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
APHE667
AASP785
AMG901
AMG902
AHOH1123
AHOH1147
AHOH1287
BDOC112
CDT204
CDG205

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 904
ChainResidue
ALYS314
AASP578
CDC209
CHOH316

site_idAC5
Number of Residues12
DetailsBINDING SITE FOR RESIDUE MG A 905
ChainResidue
AHOH1295
AHOH1295
AHOH1296
AHOH1296
AHOH1297
AHOH1297
AHOH1298
AHOH1298
AHOH1299
AHOH1299
AHOH1300
AHOH1300

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 906
ChainResidue
ATRP318
AHOH1172
AHOH1174

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 201
ChainResidue
BHOH320
BHOH321
BHOH322
BHOH323
BHOH324
CHOH332

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

221051

PDB entries from 2024-06-12

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