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4CH8

High-salt crystal structure of a thrombin-GpIbalpha peptide complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0004252molecular_functionserine-type endopeptidase activity
A0005576cellular_componentextracellular region
A0006508biological_processproteolysis
A0007596biological_processblood coagulation
B0004252molecular_functionserine-type endopeptidase activity
B0005509molecular_functioncalcium ion binding
B0006508biological_processproteolysis
B0007596biological_processblood coagulation
C0004252molecular_functionserine-type endopeptidase activity
C0005576cellular_componentextracellular region
C0006508biological_processproteolysis
C0007596biological_processblood coagulation
D0004252molecular_functionserine-type endopeptidase activity
D0005509molecular_functioncalcium ion binding
D0006508biological_processproteolysis
D0007596biological_processblood coagulation
E0004252molecular_functionserine-type endopeptidase activity
E0005576cellular_componentextracellular region
E0006508biological_processproteolysis
E0007596biological_processblood coagulation
F0004252molecular_functionserine-type endopeptidase activity
F0005509molecular_functioncalcium ion binding
F0006508biological_processproteolysis
F0007596biological_processblood coagulation
G0004252molecular_functionserine-type endopeptidase activity
G0005576cellular_componentextracellular region
G0006508biological_processproteolysis
G0007596biological_processblood coagulation
H0004252molecular_functionserine-type endopeptidase activity
H0005509molecular_functioncalcium ion binding
H0006508biological_processproteolysis
H0007596biological_processblood coagulation
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA B 1578
ChainResidue
BARG553
BLYS556
BHOH2089

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 1580
ChainResidue
BHOH2006
BGLY330
BMET331
BSER332
BPRO333
BLYS385
BTYR434

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA D 1580
ChainResidue
DARG553
DLYS556
DHOH2085
DHOH2099

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA F 1578
ChainResidue
FARG553
FLYS556
FHOH2071
FHOH2072
FHOH2089

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL F 1580
ChainResidue
FLEU450
FVAL488
FARG490
FCYS493
FPHE506
FCYS507

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA H 1580
ChainResidue
HARG553
HLYS556
HHOH2073
HHOH2084

site_idAC7
Number of Residues16
DetailsBinding site for Ligand 0G6 B1579 bound to SER B 525
ChainResidue
BHIS363
BGLU414
BASP519
BALA520
BGLY523
BSER525
BSER546
BTRP547
BGLY548
BGLY550
BGLY558
BHOH2015
BHOH2080
BHOH2081
BHOH2082
BHOH2086

site_idAC8
Number of Residues16
DetailsBinding site for Ligand 0G6 D1581 bound to SER D 525
ChainResidue
DHIS363
DTYR367
DLEU416
DASP519
DALA520
DGLY523
DASP524
DSER525
DSER546
DTRP547
DGLY548
DGLY550
DHOH2087
DHOH2088
DHOH2090
DHOH2095

site_idAC9
Number of Residues19
DetailsBinding site for Ligand 0G6 F1579 bound to SER F 525
ChainResidue
FHIS363
FTYR367
FLEU416
FASP519
FALA520
FGLY523
FSER525
FSER546
FTRP547
FGLY548
FGLY550
FGLY558
FHOH2079
FHOH2080
FHOH2081
FHOH2082
FHOH2085
FHOH2093
FHOH2094

site_idBC1
Number of Residues15
DetailsBinding site for Ligand 0G6 H1581 bound to SER H 525
ChainResidue
HHIS363
HTYR367
HLEU416
HASP519
HALA520
HGLY523
HSER525
HSER546
HTRP547
HGLY548
HGLY550
HGLY558
HHOH2076
HHOH2077
HHOH2081

Functional Information from PROSITE/UniProt
site_idPS00134
Number of Residues6
DetailsTRYPSIN_HIS Serine proteases, trypsin family, histidine active site. LTAAHC
ChainResidueDetails
BLEU359-CYS364

site_idPS00135
Number of Residues12
DetailsTRYPSIN_SER Serine proteases, trypsin family, serine active site. DAceGDSGGPFV
ChainResidueDetails
BASP519-VAL530

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsMOD_RES: Sulfotyrosine => ECO:0000269|PubMed:12087105
ChainResidueDetails
PPTR276
SPTR276
SPTR278
SPTR279
PPTR278
PPTR279
QPTR276
QPTR278
QPTR279
RPTR276
RPTR278
RPTR279

site_idSWS_FT_FI2
Number of Residues4
DetailsCARBOHYD: N-linked (GlcNAc...) (complex) asparagine => ECO:0000269|PubMed:16335952, ECO:0000269|PubMed:19139490, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19838169, ECO:0000269|PubMed:873923
ChainResidueDetails
BASN373
DASN373
FASN373
HASN373

218853

PDB entries from 2024-04-24

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