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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4BMV

Short-chain dehydrogenase from Sphingobium yanoikuyae in complex with NADPH

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0005829	cellular_component	cytosol
A	0016491	molecular_function	oxidoreductase activity
B	0000166	molecular_function	nucleotide binding
B	0005829	cellular_component	cytosol
B	0016491	molecular_function	oxidoreductase activity
C	0000166	molecular_function	nucleotide binding
C	0005829	cellular_component	cytosol
C	0016491	molecular_function	oxidoreductase activity
D	0000166	molecular_function	nucleotide binding
D	0005829	cellular_component	cytosol
D	0016491	molecular_function	oxidoreductase activity
E	0000166	molecular_function	nucleotide binding
E	0005829	cellular_component	cytosol
E	0016491	molecular_function	oxidoreductase activity
F	0000166	molecular_function	nucleotide binding
F	0005829	cellular_component	cytosol
F	0016491	molecular_function	oxidoreductase activity
G	0000166	molecular_function	nucleotide binding
G	0005829	cellular_component	cytosol
G	0016491	molecular_function	oxidoreductase activity
H	0000166	molecular_function	nucleotide binding
H	0005829	cellular_component	cytosol
H	0016491	molecular_function	oxidoreductase activity
I	0000166	molecular_function	nucleotide binding
I	0005829	cellular_component	cytosol
I	0016491	molecular_function	oxidoreductase activity
J	0000166	molecular_function	nucleotide binding
J	0005829	cellular_component	cytosol
J	0016491	molecular_function	oxidoreductase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	33
Details	BINDING SITE FOR RESIDUE NAP A 300

Chain	Residue
A	GLY11
A	ASP62
A	LEU63
A	ASN88
A	GLY90
A	LEU111
A	ILE138
A	GLY139
A	SER140
A	TYR153
A	LYS157
A	SER13
A	PRO183
A	ALA184
A	ALA185
A	THR186
A	THR188
A	GLU189
A	ILE190
A	TRP191
A	ARG193
A	HOH2002
A	SER14
A	HOH2003
A	HOH2007
A	HOH2028
A	HOH2049
A	GLY15
A	ILE16
A	ALA35
A	ARG36
A	ASP37
A	ALA61

site_id	AC2
Number of Residues	32
Details	BINDING SITE FOR RESIDUE NAP B 300

Chain	Residue
B	GLY11
B	SER13
B	SER14
B	GLY15
B	ILE16
B	ARG36
B	ASP37
B	ALA61
B	ASP62
B	LEU63
B	ASN88
B	GLY90
B	LEU111
B	ILE138
B	GLY139
B	SER140
B	TYR153
B	LYS157
B	PRO183
B	ALA184
B	ALA185
B	THR186
B	THR188
B	GLU189
B	ILE190
B	TRP191
B	ARG193
B	HOH2002
B	HOH2003
B	HOH2005
B	HOH2020
B	HOH2022

site_id	AC3
Number of Residues	32
Details	BINDING SITE FOR RESIDUE NAP C 300

Chain	Residue
C	GLY11
C	ALA12
C	SER13
C	SER14
C	GLY15
C	ILE16
C	ARG36
C	ASP37
C	ALA61
C	ASP62
C	LEU63
C	ASN88
C	ALA89
C	GLY90
C	LEU111
C	ILE138
C	GLY139
C	SER140
C	TYR153
C	LYS157
C	PRO183
C	ALA184
C	ALA185
C	THR186
C	THR188
C	GLU189
C	ILE190
C	TRP191
C	ARG193
C	HOH2004
C	HOH2021
C	HOH2040

site_id	AC4
Number of Residues	31
Details	BINDING SITE FOR RESIDUE NAP D 300

Chain	Residue
D	SER14
D	GLY15
D	ILE16
D	ALA35
D	ARG36
D	ASP37
D	ALA61
D	ASP62
D	LEU63
D	ASN88
D	GLY90
D	LEU111
D	ILE138
D	GLY139
D	SER140
D	TYR153
D	LYS157
D	PRO183
D	ALA184
D	ALA185
D	THR186
D	THR188
D	GLU189
D	ILE190
D	TRP191
D	ARG193
D	HOH2001
D	HOH2002
D	HOH2006
D	GLY11
D	SER13

site_id	AC5
Number of Residues	34
Details	BINDING SITE FOR RESIDUE NAP E 300

Chain	Residue
E	GLY11
E	ALA12
E	SER13
E	SER14
E	GLY15
E	ILE16
E	ARG36
E	ASP37
E	ALA61
E	ASP62
E	LEU63
E	ASN88
E	ALA89
E	GLY90
E	LEU111
E	ILE138
E	GLY139
E	SER140
E	TYR153
E	LYS157
E	PRO183
E	ALA184
E	ALA185
E	THR186
E	THR188
E	GLU189
E	ILE190
E	TRP191
E	ARG193
E	HOH2005
E	HOH2006
E	HOH2023
E	HOH2025
E	HOH2050

site_id	AC6
Number of Residues	32
Details	BINDING SITE FOR RESIDUE NAP F 300

Chain	Residue
F	GLY11
F	ALA12
F	SER13
F	SER14
F	GLY15
F	ILE16
F	ALA35
F	ARG36
F	ASP37
F	ALA61
F	ASP62
F	LEU63
F	ASN88
F	GLY90
F	LEU111
F	GLY139
F	SER140
F	TYR153
F	LYS157
F	PRO183
F	ALA184
F	ALA185
F	THR186
F	THR188
F	GLU189
F	ILE190
F	TRP191
F	ARG193
F	HOH2002
F	HOH2010
F	HOH2012
F	HOH2023

site_id	AC7
Number of Residues	34
Details	BINDING SITE FOR RESIDUE NAP G 300

Chain	Residue
G	GLY11
G	ALA12
G	SER13
G	SER14
G	GLY15
G	ILE16
G	ARG36
G	ASP37
G	ALA61
G	ASP62
G	LEU63
G	ASN88
G	ALA89
G	GLY90
G	LEU111
G	ILE138
G	GLY139
G	SER140
G	TYR153
G	LYS157
G	PRO183
G	ALA184
G	ALA185
G	THR186
G	THR188
G	GLU189
G	ILE190
G	TRP191
G	ARG193
G	HOH2002
G	HOH2003
G	HOH2006
G	HOH2007
G	HOH2012

site_id	AC8
Number of Residues	31
Details	BINDING SITE FOR RESIDUE NAP H 300

Chain	Residue
H	GLY11
H	SER13
H	SER14
H	GLY15
H	ILE16
H	ARG36
H	ASP37
H	ALA61
H	ASP62
H	LEU63
H	ASN88
H	ALA89
H	GLY90
H	LEU111
H	ILE138
H	GLY139
H	SER140
H	TYR153
H	LYS157
H	PRO183
H	ALA184
H	ALA185
H	THR186
H	THR188
H	GLU189
H	ILE190
H	TRP191
H	ARG193
H	HOH2003
H	HOH2005
H	HOH2006

site_id	AC9
Number of Residues	26
Details	BINDING SITE FOR RESIDUE NAP I 300

Chain	Residue
I	GLY11
I	SER13
I	SER14
I	GLY15
I	ILE16
I	ALA35
I	ARG36
I	ASP37
I	ALA61
I	ASP62
I	LEU63
I	ASN88
I	GLY90
I	LEU111
I	ILE138
I	GLY139
I	SER140
I	TYR153
I	LYS157
I	PRO183
I	ALA184
I	THR186
I	THR188
I	GLU189
I	ILE190
I	TRP191

site_id	BC1
Number of Residues	26
Details	BINDING SITE FOR RESIDUE NAP J 300

Chain	Residue
J	GLY11
J	SER13
J	SER14
J	GLY15
J	ILE16
J	ALA35
J	ARG36
J	ASP37
J	ALA61
J	ASP62
J	LEU63
J	ASN88
J	GLY90
J	LEU111
J	ILE138
J	GLY139
J	SER140
J	TYR153
J	LYS157
J	PRO183
J	ALA184
J	THR186
J	THR188
J	GLU189
J	ILE190
J	TRP191

221051

PDB entries from 2024-06-12

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