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4B9V

Structure of the high fidelity DNA polymerase I with extending from an oxidative formamidopyrimidine-dG DNA lesion -dA basepair.

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0004518molecular_functionnuclease activity
A0006139biological_processnucleobase-containing compound metabolic process
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0008408molecular_function3'-5' exonuclease activity
A0046872molecular_functionmetal ion binding
A0071897biological_processDNA biosynthetic process
A0097681biological_processdouble-strand break repair via alternative nonhomologous end joining
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1877
ChainResidue
AHIS682
AARG702
ALYS706
AHOH2123

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1878
ChainResidue
AMET299
AALA300
AARG343
AARG677

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1879
ChainResidue
AVAL322
AASP425
ATYR429
AGLU321

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1880
ChainResidue
AGLU667
AASP668
AASP669
AGLY745
AARG748
AHOH2128

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 1881
ChainResidue
AHIS568
AARG779
AARG819

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1882
ChainResidue
ASER655
AGLN656
AMG1883
AHOH2118

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1883
ChainResidue
AASP653
ATYR654
AASP830
ASO41882

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RrqAKavnFGivYgiSdygL
ChainResidueDetails
AARG702-LEU721

221051

PDB entries from 2024-06-12

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