3W1B

Crystal Structure of Human DNA ligase IV-Artemis Complex (Mercury Derivative)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003677	molecular_function	DNA binding
A	0003909	molecular_function	DNA ligase activity
A	0003910	molecular_function	DNA ligase (ATP) activity
A	0005524	molecular_function	ATP binding
A	0006281	biological_process	DNA repair
A	0006310	biological_process	DNA recombination
A	0051103	biological_process	DNA ligation involved in DNA repair
A	0071897	biological_process	DNA biosynthetic process

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE AMP A 701

Chain	Residue
A	LYS273
A	LYS449
A	LYS451
A	SO4708

---

site_id	AC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 A 702

Chain	Residue
A	ARG32
A	VAL198
A	SER199
A	THR202

---

site_id	AC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SO4 A 703

Chain	Residue
A	GLU277
A	ARG278
A	ARG293
A	GLU331
A	HOH957
A	HOH964
A	GLY276

---

site_id	AC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 A 704

Chain	Residue
A	SER292
A	ARG293
A	ASN294
A	TYR298
A	HOH834

---

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 A 705

Chain	Residue
A	TYR298
A	ASP300
A	GLN301
A	HOH936

---

site_id	AC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 A 706

Chain	Residue
A	LYS320
A	ALA321
A	HOH965

---

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 A 707

Chain	Residue
A	ARG25
A	ARG37
A	HIS38
A	ASN412

---

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 A 708

Chain	Residue
A	LEU250
A	ALA251
A	ARG293
A	ARG443
A	LYS449
A	AMP701

---

site_id	AC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 A 709

Chain	Residue
A	ARG163
A	LYS527

---

site_id	BC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 A 710

Chain	Residue
A	HIS530
A	ARG531
A	LYS532

---

site_id	BC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 A 711

Chain	Residue
A	ARG163
A	PRO528
A	HIS530

---

site_id	BC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE HG A 712

Chain	Residue
A	CYS137
A	GLN139
A	HOH1016

---

site_id	BC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE HG A 713

Chain	Residue
A	MET68
A	LEU221
A	CYS225

---

site_id	BC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE HG A 714

Chain	Residue
A	PHE342
A	CYS363
A	TYR364
A	CYS365
A	GLU401

---

site_id	BC6
Number of Residues	2
Details	BINDING SITE FOR RESIDUE HG A 715

Chain	Residue
A	MET343
A	CYS510

---

site_id	BC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE HG A 716

Chain	Residue
A	MET479
A	CYS510
A	HG720

---

site_id	BC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE HG A 717

Chain	Residue
A	CYS552
A	ASN553

---

site_id	BC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE HG A 718

Chain	Residue
A	PHE529
A	ILE538
A	CYS540

---

site_id	CC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE HG A 719

Chain	Residue
A	THR572
A	CYS574
A	LEU599
A	ARG603

---

site_id	CC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE HG A 720

Chain	Residue
A	SER508
A	CYS510
A	LEU515
A	HG716

---

site_id	CC3
Number of Residues	10
Details	BINDING SITE FOR CHAIN B OF ARTEMIS-DERIVED PEPTIDE

Chain	Residue
A	VAL14
A	PRO15
A	ASP18
A	ARG25
A	SER45
A	TRP46
A	LYS48
A	PHE49
A	ALA52
B	HOH501

---

Functional Information from PROSITE/UniProt

site_id	PS00333
Number of Residues	25
Details	DNA_LIGASE_A2 ATP-dependent DNA ligase signature 2. EGIMVKqplsi...YKpdk...RgegwlKIK

Chain	Residue	Details
A	GLU427-LYS451

---

site_id	PS00697
Number of Residues	9
Details	DNA_LIGASE_A1 ATP-dependent DNA ligase AMP-binding site. ETKLDGERM

Chain	Residue	Details
A	GLU271-MET279

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	ACT_SITE: N6-AMP-lysine intermediate => ECO:0000255|PROSITE-ProRule:PRU10135, ECO:0000269|PubMed:23523427, ECO:0000269|PubMed:29980672, ECO:0007744|PDB:3W1B

Chain	Residue	Details
A	LYS273

---

site_id	SWS_FT_FI2
Number of Residues	1
Details	BINDING: BINDING => ECO:0000250|UniProtKB:P18858

Chain	Residue	Details
A	GLU271

---

site_id	SWS_FT_FI3
Number of Residues	5
Details	BINDING: BINDING => ECO:0000269|PubMed:23523427, ECO:0007744|PDB:3W1G, ECO:0007744|PDB:3W5O

Chain	Residue	Details
A	LEU274
A	LYS449
A	LYS451
A	THR272
A	LYS273

---

site_id	SWS_FT_FI4
Number of Residues	4
Details	BINDING: BINDING => ECO:0000269|PubMed:23523427, ECO:0007744|PDB:3W5O

Chain	Residue	Details
A	ARG278
A	LYS345
A	PHE367
A	LYS432

---

site_id	SWS_FT_FI5
Number of Residues	2
Details	BINDING: BINDING => ECO:0000255

Chain	Residue	Details
A	GLU331
A	GLU427

---