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3VET

Crystal structure of the O-carbamoyltransferase TobZ in complex with Tobramycin, carbamoyl phosphate and ADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005506molecular_functioniron ion binding
A0005524molecular_functionATP binding
A0009058biological_processbiosynthetic process
A0016743molecular_functioncarboxyl- or carbamoyltransferase activity
A0016787molecular_functionhydrolase activity
A0016874molecular_functionligase activity
A0017000biological_processantibiotic biosynthetic process
A0046872molecular_functionmetal ion binding
A1901121biological_processtobramycin biosynthetic process
A1901133biological_processkanamycin biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ADP A 601
ChainResidue
AGLY186
AARG498
ASER530
AASN532
AARG534
AGLY535
ACP602
AMN605
AHOH727
AHOH827
AHOH829
AGLY190
AHOH838
AHOH988
AARG418
ALYS443
AARG445
AARG449
APRO450
AHIS492
ASER496

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE CP A 602
ChainResidue
AARG418
AALA419
ALYS443
AMET473
AARG498
AASN528
ATHR529
ASER530
AADP601
AMN605
AHOH803
AHOH816
AHOH988

site_idAC3
Number of Residues22
DetailsBINDING SITE FOR RESIDUE ADP A 603
ChainResidue
AHIS14
ATRP71
AHIS114
AHIS118
AASP137
AGLY138
AGLN139
AGLY168
ATYR171
AGLU172
APRO185
AGLY310
AVAL311
ALEU313
AASN314
ASER337
AASP338
ATOY604
AFE2607
AHOH821
AHOH833
AHOH860

site_idAC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE TOY A 604
ChainResidue
AASP12
AHIS14
APHE169
AGLU172
AGLU176
AASP228
ATYR230
AADP603
AHOH821
AHOH834
AHOH861
AHOH921

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 605
ChainResidue
ASER530
AADP601
ACP602
AHOH987
AHOH988

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE K A 606
ChainResidue
ALEU322
AARG324
AVAL327

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE2 A 607
ChainResidue
AHIS114
AHIS118
AASP137
AASP338
AADP603

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 608
ChainResidue
AGLU369
APHE370
AALA409
AGLY411
AARG423
AGLY560
AHOH854

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305|PubMed:22383337
ChainResidueDetails
AHIS14

site_idSWS_FT_FI2
Number of Residues9
DetailsBINDING: BINDING => ECO:0000269|PubMed:22383337, ECO:0007744|PDB:3VET
ChainResidueDetails
AGLU172
AASP228
AASP338
AARG498
AASN528
AASP12
AHIS114
AHIS118
AASP137

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:22383337, ECO:0007744|PDB:3VEZ
ChainResidueDetails
AARG418
AARG449
ALYS39

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:22383337, ECO:0007744|PDB:3VEX
ChainResidueDetails
AASN314
AGLN139
AGLY168
AGLY310

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PDB entries from 2024-06-12

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