Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000049 | molecular_function | tRNA binding |
A | 0003723 | molecular_function | RNA binding |
A | 0003735 | molecular_function | structural constituent of ribosome |
A | 0005840 | cellular_component | ribosome |
A | 0006412 | biological_process | translation |
A | 0006417 | biological_process | regulation of translation |
A | 0015934 | cellular_component | large ribosomal subunit |
A | 0019843 | molecular_function | rRNA binding |
A | 0022625 | cellular_component | cytosolic large ribosomal subunit |
A | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 301 |
Chain | Residue |
A | GLU197 |
A | THR207 |
A | PHE208 |
A | LEU209 |
site_id | AC2 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE MLI A 302 |
Chain | Residue |
A | ILE83 |
A | LYS84 |
A | GLU87 |
A | ALA178 |
A | SER179 |
A | MG305 |
A | HOH417 |
A | ALA33 |
A | ALA35 |
A | PHE37 |
A | ASP38 |
A | GLU39 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MLI A 303 |
Chain | Residue |
A | ALA112 |
A | ILE156 |
A | ARG160 |
A | ILE161 |
A | GLU162 |
A | HOH453 |
A | HOH457 |
site_id | AC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE MLI A 304 |
Chain | Residue |
A | PHE37 |
A | ASP38 |
A | ALA78 |
A | GLY80 |
A | GLY96 |
A | GLU97 |
A | GLU98 |
A | HOH474 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG A 305 |
Chain | Residue |
A | ALA33 |
A | ALA35 |
A | PHE37 |
A | GLU39 |
A | MLI302 |
site_id | AC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL A 306 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL A 307 |
Chain | Residue |
A | GLY60 |
A | THR61 |
A | HIS199 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE NA A 308 |
Chain | Residue |
A | ARG6 |
A | LEU10 |
A | THR34 |
A | HOH408 |
A | HOH409 |
site_id | AC9 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE NA A 309 |
Chain | Residue |
A | ARG6 |
A | LEU10 |
A | LEU32 |
A | ALA33 |
A | THR34 |
A | GLU39 |
A | MET218 |
A | GLY219 |
site_id | BC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NA A 310 |
Chain | Residue |
A | ARG6 |
A | HOH466 |
B | C2129 |
B | U2130 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA A 311 |
Chain | Residue |
A | GLU42 |
A | THR216 |
A | THR217 |
B | G2123 |
B | C2175 |
B | A2176 |
site_id | BC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 B 2201 |
Chain | Residue |
B | C2175 |
B | A2176 |
B | HOH2304 |
B | HOH2321 |
B | HOH2372 |
B | HOH2375 |
B | HOH2376 |
B | HOH2383 |
B | HOH2388 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MLI B 2202 |
Chain | Residue |
B | A2134 |
B | A2135 |
B | G2156 |
B | G2157 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MLI B 2203 |
Chain | Residue |
B | C2178 |
B | C2179 |
B | HOH2361 |
B | HOH2362 |
B | HOH2370 |
B | HOH2391 |
site_id | BC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE MLI B 2204 |
Chain | Residue |
B | U2130 |
B | G2131 |
B | C2139 |
B | C2140 |
B | G2152 |
B | G2159 |
B | HOH2371 |
site_id | BC7 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE MLI B 2205 |
Chain | Residue |
B | A2119 |
B | G2121 |
B | A2170 |
B | HOH2325 |
B | HOH2334 |
B | HOH2400 |
B | HOH2410 |
B | HOH2414 |
B | HOH2416 |
site_id | BC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 2206 |
Chain | Residue |
B | G2123 |
B | HOH2302 |
B | HOH2321 |
B | HOH2325 |
B | HOH2326 |
B | U2122 |
site_id | BC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 2207 |
Chain | Residue |
B | HOH2304 |
B | HOH2315 |
B | HOH2321 |
B | HOH2325 |
B | HOH2363 |
B | HOH2399 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 2208 |
Chain | Residue |
B | G2120 |
B | HOH2304 |
B | HOH2376 |
B | HOH2377 |
B | HOH2378 |
B | HOH2424 |
site_id | CC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG B 2209 |
Chain | Residue |
B | U2172 |
B | HOH2341 |
B | HOH2379 |
B | HOH2380 |
B | HOH2381 |
site_id | CC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE NA B 2210 |
Chain | Residue |
A | GLU42 |
A | HIS44 |
B | G2123 |
B | G2124 |
Functional Information from PROSITE/UniProt
site_id | PS00430 |
Number of Residues | 47 |
Details | TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mpkhgkryrallekvdpnkiytideaahlvkelatakfd............................................................................ETVEVHAK |
Chain | Residue | Details |
A | MET0-LYS46 | |
site_id | PS01199 |
Number of Residues | 20 |
Details | RIBOSOMAL_L1 Ribosomal protein L1 signature. MgaVgskLGriLGPRGlLPN |
Chain | Residue | Details |
A | MET120-ASN139 | |