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3U4M

Crystal structure of ribosomal protein tthl1 in complex with 80nt 23s rna from thermus thermophilus

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0003723molecular_functionRNA binding
A0003735molecular_functionstructural constituent of ribosome
A0005840cellular_componentribosome
A0006412biological_processtranslation
A0006417biological_processregulation of translation
A0015934cellular_componentlarge ribosomal subunit
A0019843molecular_functionrRNA binding
A0022625cellular_componentcytosolic large ribosomal subunit
A1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 301
ChainResidue
AGLU197
ATHR207
APHE208
ALEU209

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE MLI A 302
ChainResidue
AILE83
ALYS84
AGLU87
AALA178
ASER179
AMG305
AHOH417
AALA33
AALA35
APHE37
AASP38
AGLU39

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MLI A 303
ChainResidue
AALA112
AILE156
AARG160
AILE161
AGLU162
AHOH453
AHOH457

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MLI A 304
ChainResidue
APHE37
AASP38
AALA78
AGLY80
AGLY96
AGLU97
AGLU98
AHOH474

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 305
ChainResidue
AALA33
AALA35
APHE37
AGLU39
AMLI302

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 306
ChainResidue
AGLU81

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 307
ChainResidue
AGLY60
ATHR61
AHIS199

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 308
ChainResidue
AARG6
ALEU10
ATHR34
AHOH408
AHOH409

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE NA A 309
ChainResidue
AARG6
ALEU10
ALEU32
AALA33
ATHR34
AGLU39
AMET218
AGLY219

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA A 310
ChainResidue
AARG6
AHOH466
BC2129
BU2130

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 311
ChainResidue
AGLU42
ATHR216
ATHR217
BG2123
BC2175
BA2176

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 2201
ChainResidue
BC2175
BA2176
BHOH2304
BHOH2321
BHOH2372
BHOH2375
BHOH2376
BHOH2383
BHOH2388

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MLI B 2202
ChainResidue
BA2134
BA2135
BG2156
BG2157

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MLI B 2203
ChainResidue
BC2178
BC2179
BHOH2361
BHOH2362
BHOH2370
BHOH2391

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MLI B 2204
ChainResidue
BU2130
BG2131
BC2139
BC2140
BG2152
BG2159
BHOH2371

site_idBC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MLI B 2205
ChainResidue
BA2119
BG2121
BA2170
BHOH2325
BHOH2334
BHOH2400
BHOH2410
BHOH2414
BHOH2416

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 2206
ChainResidue
BG2123
BHOH2302
BHOH2321
BHOH2325
BHOH2326
BU2122

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 2207
ChainResidue
BHOH2304
BHOH2315
BHOH2321
BHOH2325
BHOH2363
BHOH2399

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 2208
ChainResidue
BG2120
BHOH2304
BHOH2376
BHOH2377
BHOH2378
BHOH2424

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 2209
ChainResidue
BU2172
BHOH2341
BHOH2379
BHOH2380
BHOH2381

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA B 2210
ChainResidue
AGLU42
AHIS44
BG2123
BG2124

Functional Information from PROSITE/UniProt
site_idPS00430
Number of Residues47
DetailsTONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mpkhgkryrallekvdpnkiytideaahlvkelatakfd............................................................................ETVEVHAK
ChainResidueDetails
AMET0-LYS46

site_idPS01199
Number of Residues20
DetailsRIBOSOMAL_L1 Ribosomal protein L1 signature. MgaVgskLGriLGPRGlLPN
ChainResidueDetails
AMET120-ASN139

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PDB entries from 2024-06-12

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