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3SXP

Crystal Structure of Helicobacter pylori ADP-L-glycero-D-manno-heptose-6-epimerase (rfaD, HP0859)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005975biological_processcarbohydrate metabolic process
A0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
A0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
A0010253biological_processUDP-rhamnose biosynthetic process
A0010280molecular_functionUDP-L-rhamnose synthase activity
A0010315biological_processauxin export across the plasma membrane
A0016853molecular_functionisomerase activity
A0050377molecular_functionUDP-glucose 4,6-dehydratase activity
A0050661molecular_functionNADP binding
A0051555biological_processflavonol biosynthetic process
B0000166molecular_functionnucleotide binding
B0005975biological_processcarbohydrate metabolic process
B0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
B0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
B0010253biological_processUDP-rhamnose biosynthetic process
B0010280molecular_functionUDP-L-rhamnose synthase activity
B0010315biological_processauxin export across the plasma membrane
B0016853molecular_functionisomerase activity
B0050377molecular_functionUDP-glucose 4,6-dehydratase activity
B0050661molecular_functionNADP binding
B0051555biological_processflavonol biosynthetic process
C0000166molecular_functionnucleotide binding
C0005975biological_processcarbohydrate metabolic process
C0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
C0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
C0010253biological_processUDP-rhamnose biosynthetic process
C0010280molecular_functionUDP-L-rhamnose synthase activity
C0010315biological_processauxin export across the plasma membrane
C0016853molecular_functionisomerase activity
C0050377molecular_functionUDP-glucose 4,6-dehydratase activity
C0050661molecular_functionNADP binding
C0051555biological_processflavonol biosynthetic process
D0000166molecular_functionnucleotide binding
D0005975biological_processcarbohydrate metabolic process
D0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
D0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
D0010253biological_processUDP-rhamnose biosynthetic process
D0010280molecular_functionUDP-L-rhamnose synthase activity
D0010315biological_processauxin export across the plasma membrane
D0016853molecular_functionisomerase activity
D0050377molecular_functionUDP-glucose 4,6-dehydratase activity
D0050661molecular_functionNADP binding
D0051555biological_processflavonol biosynthetic process
E0000166molecular_functionnucleotide binding
E0005975biological_processcarbohydrate metabolic process
E0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
E0008712molecular_functionADP-glyceromanno-heptose 6-epimerase activity
E0010253biological_processUDP-rhamnose biosynthetic process
E0010280molecular_functionUDP-L-rhamnose synthase activity
E0010315biological_processauxin export across the plasma membrane
E0016853molecular_functionisomerase activity
E0050377molecular_functionUDP-glucose 4,6-dehydratase activity
E0050661molecular_functionNADP binding
E0051555biological_processflavonol biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues26
DetailsBINDING SITE FOR RESIDUE NAD A 2402
ChainResidue
AGLY17
AALA75
AASP76
AILE77
AGLN97
AALA98
AALA99
AALA136
ASER137
ASER138
ATYR161
AALA19
ALYS165
ATYR186
AVAL189
ALYS197
AHOH390
AHOH404
AHOH412
AGLY20
APHE21
AVAL22
AASP43
ALYS44
ASER58
AGLY60

site_idAC2
Number of Residues27
DetailsBINDING SITE FOR RESIDUE NAD B 2401
ChainResidue
BGLY17
BALA19
BGLY20
BPHE21
BVAL22
BASP43
BLYS44
BSER58
BLEU59
BGLY60
BALA75
BASP76
BILE77
BGLN97
BALA98
BALA99
BALA136
BSER137
BSER138
BTYR161
BLYS165
BTYR186
BVAL189
BLYS197
BHOH383
BHOH389
BHOH403

site_idAC3
Number of Residues27
DetailsBINDING SITE FOR RESIDUE NAD C 2403
ChainResidue
CGLY17
CALA19
CGLY20
CPHE21
CVAL22
CASP43
CLYS44
CSER58
CLEU59
CGLY60
CALA75
CASP76
CILE77
CGLN97
CALA98
CALA99
CALA136
CSER137
CSER138
CTYR161
CLYS165
CTYR186
CVAL189
CLYS197
CHOH369
CHOH375
CHOH384

site_idAC4
Number of Residues27
DetailsBINDING SITE FOR RESIDUE NAD D 2401
ChainResidue
DLYS165
DTYR186
DASN188
DVAL189
DLYS197
DHOH372
DHOH374
DHOH379
DGLY17
DALA19
DGLY20
DPHE21
DVAL22
DASP43
DLYS44
DSER58
DGLY60
DALA75
DASP76
DILE77
DGLN97
DALA98
DALA99
DALA136
DSER137
DSER138
DTYR161

site_idAC5
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAD E 2403
ChainResidue
EGLY17
EALA19
EGLY20
EPHE21
EVAL22
EASP43
ELYS44
ESER58
EGLY60
EALA75
EASP76
EILE77
EGLN97
EALA98
EALA99
EALA136
ESER137
ESER138
ETYR161
ELYS165
ETYR186
EVAL189
ELYS197
EHOH379
EHOH384

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PDB entries from 2024-06-12

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