3SEQ
Crystal structure of C176A mutant of glutamine-dependent NAD+ synthetase from M. tuberculosis in complex with AMPCPP and NaAD+
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003952 | molecular_function | NAD+ synthase (glutamine-hydrolyzing) activity |
A | 0004359 | molecular_function | glutaminase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005886 | cellular_component | plasma membrane |
A | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
A | 0008795 | molecular_function | NAD+ synthase activity |
A | 0009274 | cellular_component | peptidoglycan-based cell wall |
A | 0009435 | biological_process | NAD biosynthetic process |
A | 0016874 | molecular_function | ligase activity |
A | 0042802 | molecular_function | identical protein binding |
B | 0003952 | molecular_function | NAD+ synthase (glutamine-hydrolyzing) activity |
B | 0004359 | molecular_function | glutaminase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005886 | cellular_component | plasma membrane |
B | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
B | 0008795 | molecular_function | NAD+ synthase activity |
B | 0009274 | cellular_component | peptidoglycan-based cell wall |
B | 0009435 | biological_process | NAD biosynthetic process |
B | 0016874 | molecular_function | ligase activity |
B | 0042802 | molecular_function | identical protein binding |
C | 0003952 | molecular_function | NAD+ synthase (glutamine-hydrolyzing) activity |
C | 0004359 | molecular_function | glutaminase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005886 | cellular_component | plasma membrane |
C | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
C | 0008795 | molecular_function | NAD+ synthase activity |
C | 0009274 | cellular_component | peptidoglycan-based cell wall |
C | 0009435 | biological_process | NAD biosynthetic process |
C | 0016874 | molecular_function | ligase activity |
C | 0042802 | molecular_function | identical protein binding |
D | 0003952 | molecular_function | NAD+ synthase (glutamine-hydrolyzing) activity |
D | 0004359 | molecular_function | glutaminase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005886 | cellular_component | plasma membrane |
D | 0006807 | biological_process | obsolete nitrogen compound metabolic process |
D | 0008795 | molecular_function | NAD+ synthase activity |
D | 0009274 | cellular_component | peptidoglycan-based cell wall |
D | 0009435 | biological_process | NAD biosynthetic process |
D | 0016874 | molecular_function | ligase activity |
D | 0042802 | molecular_function | identical protein binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE APC A 680 |
Chain | Residue |
A | GLY366 |
A | ARG462 |
A | THR480 |
A | DND681 |
A | VAL367 |
A | SER368 |
A | GLY370 |
A | LEU371 |
A | ASP372 |
A | SER373 |
A | PHE397 |
A | LEU399 |
site_id | AC2 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE NXX A 681 |
Chain | Residue |
A | VAL452 |
A | ASN456 |
A | GLU485 |
A | TRP490 |
A | SER491 |
A | THR492 |
A | TYR493 |
A | ASP497 |
A | PHE631 |
A | PHE634 |
A | LYS635 |
A | SER661 |
A | APC680 |
A | HOH736 |
A | HOH768 |
D | ARG354 |
D | LEU358 |
D | ASN471 |
D | GLY475 |
D | ILE476 |
D | HIS501 |
site_id | AC3 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE APC B 680 |
Chain | Residue |
B | GLY366 |
B | VAL367 |
B | SER368 |
B | GLY370 |
B | LEU371 |
B | ASP372 |
B | SER373 |
B | PHE397 |
B | LEU399 |
B | ARG462 |
B | THR480 |
B | DND681 |
site_id | AC4 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE NXX B 681 |
Chain | Residue |
B | ASN456 |
B | GLU485 |
B | TRP490 |
B | SER491 |
B | THR492 |
B | TYR493 |
B | ASP497 |
B | PHE631 |
B | PHE634 |
B | LYS635 |
B | SER661 |
B | APC680 |
B | HOH756 |
C | ARG354 |
C | LEU358 |
C | ASN471 |
C | GLY475 |
C | HIS501 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL B 682 |
Chain | Residue |
B | TYR58 |
B | SER59 |
B | ILE60 |
B | GLU61 |
B | TYR131 |
B | GLN135 |
site_id | AC6 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE APC C 680 |
Chain | Residue |
C | GLY366 |
C | VAL367 |
C | SER368 |
C | GLY370 |
C | LEU371 |
C | ASP372 |
C | SER373 |
C | PHE397 |
C | ALA398 |
C | LEU399 |
C | ARG462 |
C | THR480 |
C | DND681 |
site_id | AC7 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE NXX C 681 |
Chain | Residue |
C | APC680 |
C | HOH840 |
B | ARG354 |
B | LEU358 |
B | ASN471 |
B | GLY475 |
B | ILE476 |
B | HIS501 |
C | ASN456 |
C | GLU485 |
C | TRP490 |
C | SER491 |
C | THR492 |
C | TYR493 |
C | ASP497 |
C | PHE631 |
C | PHE634 |
C | LYS635 |
C | SER661 |
site_id | AC8 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE APC D 680 |
Chain | Residue |
D | GLY366 |
D | VAL367 |
D | SER368 |
D | GLY370 |
D | LEU371 |
D | ASP372 |
D | SER373 |
D | PHE397 |
D | ALA398 |
D | LEU399 |
D | ARG462 |
D | THR480 |
D | DND681 |
site_id | AC9 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE NXX D 681 |
Chain | Residue |
A | ARG354 |
A | LEU358 |
A | ASN471 |
A | GLY475 |
A | ILE476 |
A | HIS501 |
D | TRP490 |
D | SER491 |
D | THR492 |
D | TYR493 |
D | ASP497 |
D | PHE631 |
D | PHE634 |
D | LYS635 |
D | SER661 |
D | APC680 |
D | HOH755 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL D 682 |
Chain | Residue |
D | ARG218 |
D | ALA255 |
D | LEU256 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Proton acceptor; for glutaminase activity => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0000305|PubMed:15748981, ECO:0000305|PubMed:19270703 |
Chain | Residue | Details |
A | GLU52 | |
B | GLU52 | |
C | GLU52 | |
D | GLU52 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | ACT_SITE: For glutaminase activity => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0000305|PubMed:15748981, ECO:0000305|PubMed:19270703 |
Chain | Residue | Details |
A | LYS121 | |
B | LYS121 | |
C | LYS121 | |
D | LYS121 |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | ACT_SITE: Nucleophile; for glutaminase activity => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0000305|PubMed:15748981, ECO:0000305|PubMed:19270703 |
Chain | Residue | Details |
A | ALA176 | |
B | ALA176 | |
C | ALA176 | |
D | ALA176 |
site_id | SWS_FT_FI4 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3SYT |
Chain | Residue | Details |
A | TYR127 | |
D | TYR127 | |
D | SER203 | |
D | ARG209 | |
A | SER203 | |
A | ARG209 | |
B | TYR127 | |
B | SER203 | |
B | ARG209 | |
C | TYR127 | |
C | SER203 | |
C | ARG209 |
site_id | SWS_FT_FI5 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0007744|PDB:3DLA, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SEZ, ECO:0007744|PDB:3SYT, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | ARG354 | |
C | ASN471 | |
C | GLY475 | |
C | HIS501 | |
D | ARG354 | |
D | ASN471 | |
D | GLY475 | |
D | HIS501 | |
A | ASN471 | |
A | GLY475 | |
A | HIS501 | |
B | ARG354 | |
B | ASN471 | |
B | GLY475 | |
B | HIS501 | |
C | ARG354 |
site_id | SWS_FT_FI6 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SEZ, ECO:0007744|PDB:3SYT, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | GLY366 | |
B | GLY366 | |
C | GLY366 | |
D | GLY366 |
site_id | SWS_FT_FI7 |
Number of Residues | 4 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3DLA, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SEZ, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | ASN456 | |
B | ASN456 | |
C | ASN456 | |
D | ASN456 |
site_id | SWS_FT_FI8 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SYT, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | THR480 | |
B | THR480 | |
C | THR480 | |
D | THR480 |
site_id | SWS_FT_FI9 |
Number of Residues | 4 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SEZ, ECO:0007744|PDB:3SYT |
Chain | Residue | Details |
A | GLU485 | |
B | GLU485 | |
C | GLU485 | |
D | GLU485 |
site_id | SWS_FT_FI10 |
Number of Residues | 8 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_02090, ECO:0007744|PDB:3DLA, ECO:0007744|PDB:3SEQ, ECO:0007744|PDB:3SEZ, ECO:0007744|PDB:3SYT, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | TRP490 | |
A | LYS635 | |
B | TRP490 | |
B | LYS635 | |
C | TRP490 | |
C | LYS635 | |
D | TRP490 | |
D | LYS635 |
site_id | SWS_FT_FI11 |
Number of Residues | 4 |
Details | BINDING: in other chain => ECO:0007744|PDB:3DLA, ECO:0007744|PDB:3SZG |
Chain | Residue | Details |
A | SER661 | |
B | SER661 | |
C | SER661 | |
D | SER661 |