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3R9W

Crystal structure of Era in complex with MgGDPNP and nucleotides 1506-1542 of 16S ribosomal RNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0000028biological_processribosomal small subunit assembly
A0003723molecular_functionRNA binding
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0019843molecular_functionrRNA binding
A0042254biological_processribosome biogenesis
A0042274biological_processribosomal small subunit biogenesis
A0043024molecular_functionribosomal small subunit binding
A0070181molecular_functionsmall ribosomal subunit rRNA binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 401
ChainResidue
ASER17
ATHR38
AGNP402
AHOH611
AHOH632

site_idAC2
Number of Residues28
DetailsBINDING SITE FOR RESIDUE GNP A 402
ChainResidue
ALYS16
ASER17
ATHR18
AILE31
ASER32
APRO33
AGLY36
ATHR37
ATHR38
AGLY61
AASN123
ALYS124
AASP126
ASER155
AALA156
ALEU157
AMG401
AHOH606
AHOH611
AHOH617
AHOH624
AHOH625
AHOH632
AHOH671
APRO12
AASN13
AVAL14
AGLY15

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 502
ChainResidue
ALYS245
ATRP280
BC1533

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 503
ChainResidue
AGLU208
BC1506
BA1507
BG1530
BA1531

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT A 505
ChainResidue
AALA95

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT A 506
ChainResidue
AGLU64

site_idAC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MRD A 507
ChainResidue
AARG295

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MRD A 508
ChainResidue
AHIS142
ATHR149
BG1516

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 501
ChainResidue
BG1511
BU1512
BU1522
BG1523

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT B 504
ChainResidue
BA1531
BU1532

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
AGLY10
AASP58
AASN123

219869

PDB entries from 2024-05-15

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