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3R5B

Pseudomonas aeruginosa DapD (PA3666) in complex with L-2-aminopimelate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005737cellular_componentcytoplasm
A0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0016746molecular_functionacyltransferase activity
A0019877biological_processdiaminopimelate biosynthetic process
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0005737cellular_componentcytoplasm
B0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
B0009085biological_processlysine biosynthetic process
B0009089biological_processlysine biosynthetic process via diaminopimelate
B0016746molecular_functionacyltransferase activity
B0019877biological_processdiaminopimelate biosynthetic process
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0005737cellular_componentcytoplasm
C0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
C0009085biological_processlysine biosynthetic process
C0009089biological_processlysine biosynthetic process via diaminopimelate
C0016746molecular_functionacyltransferase activity
C0019877biological_processdiaminopimelate biosynthetic process
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0005737cellular_componentcytoplasm
D0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
D0009085biological_processlysine biosynthetic process
D0009089biological_processlysine biosynthetic process via diaminopimelate
D0016746molecular_functionacyltransferase activity
D0019877biological_processdiaminopimelate biosynthetic process
D0046872molecular_functionmetal ion binding
E0000287molecular_functionmagnesium ion binding
E0005737cellular_componentcytoplasm
E0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
E0009085biological_processlysine biosynthetic process
E0009089biological_processlysine biosynthetic process via diaminopimelate
E0016746molecular_functionacyltransferase activity
E0019877biological_processdiaminopimelate biosynthetic process
E0046872molecular_functionmetal ion binding
F0000287molecular_functionmagnesium ion binding
F0005737cellular_componentcytoplasm
F0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
F0009085biological_processlysine biosynthetic process
F0009089biological_processlysine biosynthetic process via diaminopimelate
F0016746molecular_functionacyltransferase activity
F0019877biological_processdiaminopimelate biosynthetic process
F0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues12
DetailsBINDING SITE FOR RESIDUE NPI A 381
ChainResidue
APHE129
CMET203
CMET219
CGLU221
APHE170
AARG191
AASN209
ASER225
AALA226
AGLY244
ALEU246
CARG183

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NPI C 381
ChainResidue
BARG183
BGLU221
CPHE129
CARG191
CSER225
CGLY244
CHOH369

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE NPI D 381
ChainResidue
DPHE129
DARG191
DASN209
DSER225
DALA226
DGLY244
FARG183
FMET203
FMET219
FGLU221

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NPI E 381
ChainResidue
DARG183
DMET203
DMET219
EASN209
ESER225
EALA226

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NPI E 345
ChainResidue
EARG183
EMET203
EMET219
EHOH385
FARG191

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Acyl-anhydride intermediate => ECO:0000255|HAMAP-Rule:MF_02122
ChainResidueDetails
AGLU221
BGLU221
CGLU221
DGLU221
EGLU221
FGLU221

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_02122
ChainResidueDetails
AGLU205
BGLU205
CGLU205
DGLU205
EGLU205
FGLU205

site_idSWS_FT_FI3
Number of Residues48
DetailsBINDING: BINDING => ECO:0000305|PubMed:22359568
ChainResidueDetails
AARG223
CSER241
CALA264
CGLU279
CGLY287
CLYS304
CARG317
DARG223
DGLY238
DSER241
DALA264
DGLU279
DGLY287
DLYS304
DARG317
EARG223
EGLY238
ESER241
EALA264
EGLU279
EGLY287
ELYS304
EARG317
FARG223
FGLY238
FSER241
FALA264
FGLU279
FGLY287
FLYS304
FARG317
AGLY238
ASER241
AALA264
AGLU279
AGLY287
ALYS304
AARG317
BARG223
BGLY238
BSER241
BALA264
BGLU279
BGLY287
BLYS304
BARG317
CARG223
CGLY238

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PDB entries from 2024-05-15

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