3OKA
Crystal structure of Corynebacterium glutamicum PimB' in complex with GDP-Man (triclinic crystal form)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0008654 | biological_process | phospholipid biosynthetic process |
| A | 0009247 | biological_process | glycolipid biosynthetic process |
| A | 0016757 | molecular_function | glycosyltransferase activity |
| A | 0033164 | molecular_function | glycolipid 1,6-alpha-mannosyltransferase activity |
| A | 0043750 | molecular_function | phosphatidylinositol alpha-mannosyltransferase activity |
| A | 0046488 | biological_process | phosphatidylinositol metabolic process |
| A | 0046506 | biological_process | sulfolipid biosynthetic process |
| A | 0046510 | molecular_function | UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity |
| B | 0008654 | biological_process | phospholipid biosynthetic process |
| B | 0009247 | biological_process | glycolipid biosynthetic process |
| B | 0016757 | molecular_function | glycosyltransferase activity |
| B | 0033164 | molecular_function | glycolipid 1,6-alpha-mannosyltransferase activity |
| B | 0043750 | molecular_function | phosphatidylinositol alpha-mannosyltransferase activity |
| B | 0046488 | biological_process | phosphatidylinositol metabolic process |
| B | 0046506 | biological_process | sulfolipid biosynthetic process |
| B | 0046510 | molecular_function | UDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 601 |
| Chain | Residue |
| A | ARG206 |
| A | ARG210 |
| A | ARG239 |
| A | HOH387 |
| A | HOH437 |
| D | HIS-19 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 602 |
| Chain | Residue |
| A | ARG283 |
| A | HOH451 |
| D | HIS-19 |
| A | LYS54 |
| A | PRO209 |
| A | ARG239 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 603 |
| Chain | Residue |
| A | PRO128 |
| A | GLY129 |
| A | SER130 |
| A | ARG131 |
| A | GLN132 |
| site_id | AC4 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE GDD A 701 |
| Chain | Residue |
| A | ARG206 |
| A | ARG210 |
| A | LYS211 |
| A | VAL235 |
| A | GLY236 |
| A | ARG260 |
| A | LEU261 |
| A | MET266 |
| A | GLU298 |
| A | HOH533 |
| A | HOH536 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 801 |
| Chain | Residue |
| A | THR71 |
| A | THR73 |
| A | GLU360 |
| A | HOH535 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 B 601 |
| Chain | Residue |
| B | ARG206 |
| B | ARG210 |
| B | ARG239 |
| B | HOH389 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 602 |
| Chain | Residue |
| B | LYS54 |
| B | ARG239 |
| B | ARG283 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 B 603 |
| Chain | Residue |
| B | PRO128 |
| B | GLY129 |
| B | SER130 |
| B | ARG131 |
| B | GLN132 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 B 604 |
| Chain | Residue |
| B | HIS50 |
| B | LYS54 |
| C | HIS-17 |
| C | HIS-18 |
| site_id | BC1 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE GDD B 701 |
| Chain | Residue |
| B | ARG206 |
| B | LYS211 |
| B | VAL235 |
| B | GLY236 |
| B | ARG260 |
| B | LEU261 |
| B | TYR263 |
| B | MET266 |
| B | GLU298 |
| B | HOH507 |
| B | HOH510 |
| site_id | BC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 C 700 |
| Chain | Residue |
| C | HIS-15 |
| C | HIS-14 |
| C | HIS-16 |
| site_id | BC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 D 702 |
| Chain | Residue |
| A | HIS50 |
| A | LYS54 |
| D | HIS-17 |
| D | HIS-19 |
| D | HIS-18 |
| site_id | BC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 D 701 |
| Chain | Residue |
| D | HIS-14 |
| D | HIS-15 |
| D | HIS-16 |
Functional Information from PROSITE/UniProt
| site_id | PS00430 |
| Number of Residues | 42 |
| Details | TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. msasrktlvvtndfppriggiqsylrdfiatqdp.................................................................................ESIVVFAS |
| Chain | Residue | Details |
| A | MET1-SER42 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:20843801 |
| Chain | Residue | Details |
| A | ARG206 | |
| A | LYS211 | |
| B | LEU261 | |
| B | GLU298 | |
| A | LEU261 | |
| A | GLU298 | |
| B | ARG206 | |
| B | LYS211 |
