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3M9N

Crystal Structure of Dpo4 in complex with DNA containing the major cisplatin lesion

Functional Information from GO Data
ChainGOidnamespacecontents
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 4001
ChainResidue
BASP7
BGLU106
BHOH373
BHOH406
BHOH407
PDC13

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 4002
ChainResidue
BHOH429
PHOH60
PHOH194
BALA181
BILE186
BHOH367

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 4003
ChainResidue
BASP7
BPHE8
BASP105
BCTP2001

site_idAC4
Number of Residues20
DetailsBINDING SITE FOR RESIDUE CTP B 2001
ChainResidue
BPHE8
BASP9
BTYR10
BPHE11
BTYR12
BALA44
BTHR45
BARG51
BMET76
BASP105
BLYS159
BHOH373
BHOH386
BHOH406
BHOH426
BHOH428
BHOH435
BCA4003
PDC13
TDG4

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CPT T 1005
ChainResidue
BGLY58
TDG4
TDG5

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE:
ChainResidueDetails
BGLU106

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Substrate discrimination
ChainResidueDetails
BTYR12

221051

PDB entries from 2024-06-12

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