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3LJD

The X-ray structure of zebrafish RNase1 from a new crystal form at pH 4.5

Functional Information from GO Data
ChainGOidnamespacecontents
A0001525biological_processangiogenesis
A0003676molecular_functionnucleic acid binding
A0004519molecular_functionendonuclease activity
A0004540molecular_functionRNA nuclease activity
A0050829biological_processdefense response to Gram-negative bacterium
A0050830biological_processdefense response to Gram-positive bacterium
B0001525biological_processangiogenesis
B0003676molecular_functionnucleic acid binding
B0004519molecular_functionendonuclease activity
B0004540molecular_functionRNA nuclease activity
B0050829biological_processdefense response to Gram-negative bacterium
B0050830biological_processdefense response to Gram-positive bacterium
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 3000
ChainResidue
AMET74
AHIS119
AHIS121
AHOH3063

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 3001
ChainResidue
BARG66
BHOH3173
AARG106
ATYR107
AHOH3114
AHOH3145
AHOH5022

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 A 3002
ChainResidue
AGLY18
APRO19
AASP20
AMET21
AARG25
AGLU29
AARG35
AARG66
AHOH3211
AHOH3270

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 3006
ChainResidue
AASN73
ALYS111
AHOH3236
AHOH3259
AHOH5030
AHOH5085

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ACT B 5000
ChainResidue
BGLY18
BPRO19
BASP20
BMET21
BARG25
BGLU29
BARG35
BHOH3222

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 3003
ChainResidue
AASN27
AGLU98
AHOH3022
AHOH3069
BARG106
BTYR107
BHOH3066
BHOH3072

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 B 3004
ChainResidue
AMET3
AASN126
BLYS6
BASP43
BASN44
BARG93
BHOH3116
BHOH3178
BHOH3261
BHOH5037

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 3005
ChainResidue
ALYS10
BARG100
BHOH3028
BHOH3123
BHOH3244
BHOH3265
BHOH3301

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 3007
ChainResidue
AASP123
AGLU124
BGLU114
BHOH3100
BHOH3209
BHOH3268

Functional Information from PROSITE/UniProt
site_idPS00127
Number of Residues7
DetailsRNASE_PANCREATIC Pancreatic ribonuclease family signature. CKpvNTF
ChainResidueDetails
ACYS46-PHE52

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PDB entries from 2024-05-15

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