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3K09

Crystal structure of the phosphorylation-site mutant S431D of the KaiC circadian clock protein

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0004674molecular_functionprotein serine/threonine kinase activity
A0004712molecular_functionprotein serine/threonine/tyrosine kinase activity
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0006355biological_processregulation of DNA-templated transcription
A0007623biological_processcircadian rhythm
A0009649biological_processentrainment of circadian clock
A0016787molecular_functionhydrolase activity
A0016887molecular_functionATP hydrolysis activity
A0042752biological_processregulation of circadian rhythm
A0042754biological_processnegative regulation of circadian rhythm
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
A0048511biological_processrhythmic process
A0070297biological_processregulation of phosphorelay signal transduction system
A0106310molecular_functionprotein serine kinase activity
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0004674molecular_functionprotein serine/threonine kinase activity
B0004712molecular_functionprotein serine/threonine/tyrosine kinase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0006355biological_processregulation of DNA-templated transcription
B0007623biological_processcircadian rhythm
B0009649biological_processentrainment of circadian clock
B0016787molecular_functionhydrolase activity
B0016887molecular_functionATP hydrolysis activity
B0042752biological_processregulation of circadian rhythm
B0042754biological_processnegative regulation of circadian rhythm
B0042802molecular_functionidentical protein binding
B0046872molecular_functionmetal ion binding
B0048511biological_processrhythmic process
B0070297biological_processregulation of phosphorelay signal transduction system
B0106310molecular_functionprotein serine kinase activity
C0000287molecular_functionmagnesium ion binding
C0003677molecular_functionDNA binding
C0004674molecular_functionprotein serine/threonine kinase activity
C0004712molecular_functionprotein serine/threonine/tyrosine kinase activity
C0005515molecular_functionprotein binding
C0005524molecular_functionATP binding
C0006355biological_processregulation of DNA-templated transcription
C0007623biological_processcircadian rhythm
C0009649biological_processentrainment of circadian clock
C0016787molecular_functionhydrolase activity
C0016887molecular_functionATP hydrolysis activity
C0042752biological_processregulation of circadian rhythm
C0042754biological_processnegative regulation of circadian rhythm
C0042802molecular_functionidentical protein binding
C0046872molecular_functionmetal ion binding
C0048511biological_processrhythmic process
C0070297biological_processregulation of phosphorelay signal transduction system
C0106310molecular_functionprotein serine kinase activity
D0000287molecular_functionmagnesium ion binding
D0003677molecular_functionDNA binding
D0004674molecular_functionprotein serine/threonine kinase activity
D0004712molecular_functionprotein serine/threonine/tyrosine kinase activity
D0005515molecular_functionprotein binding
D0005524molecular_functionATP binding
D0006355biological_processregulation of DNA-templated transcription
D0007623biological_processcircadian rhythm
D0009649biological_processentrainment of circadian clock
D0016787molecular_functionhydrolase activity
D0016887molecular_functionATP hydrolysis activity
D0042752biological_processregulation of circadian rhythm
D0042754biological_processnegative regulation of circadian rhythm
D0042802molecular_functionidentical protein binding
D0046872molecular_functionmetal ion binding
D0048511biological_processrhythmic process
D0070297biological_processregulation of phosphorelay signal transduction system
D0106310molecular_functionprotein serine kinase activity
E0000287molecular_functionmagnesium ion binding
E0003677molecular_functionDNA binding
E0004674molecular_functionprotein serine/threonine kinase activity
E0004712molecular_functionprotein serine/threonine/tyrosine kinase activity
E0005515molecular_functionprotein binding
E0005524molecular_functionATP binding
E0006355biological_processregulation of DNA-templated transcription
E0007623biological_processcircadian rhythm
E0009649biological_processentrainment of circadian clock
E0016787molecular_functionhydrolase activity
E0016887molecular_functionATP hydrolysis activity
E0042752biological_processregulation of circadian rhythm
E0042754biological_processnegative regulation of circadian rhythm
E0042802molecular_functionidentical protein binding
E0046872molecular_functionmetal ion binding
E0048511biological_processrhythmic process
E0070297biological_processregulation of phosphorelay signal transduction system
E0106310molecular_functionprotein serine kinase activity
F0000287molecular_functionmagnesium ion binding
F0003677molecular_functionDNA binding
F0004674molecular_functionprotein serine/threonine kinase activity
F0004712molecular_functionprotein serine/threonine/tyrosine kinase activity
F0005515molecular_functionprotein binding
F0005524molecular_functionATP binding
F0006355biological_processregulation of DNA-templated transcription
F0007623biological_processcircadian rhythm
F0009649biological_processentrainment of circadian clock
F0016787molecular_functionhydrolase activity
F0016887molecular_functionATP hydrolysis activity
F0042752biological_processregulation of circadian rhythm
F0042754biological_processnegative regulation of circadian rhythm
F0042802molecular_functionidentical protein binding
F0046872molecular_functionmetal ion binding
F0048511biological_processrhythmic process
F0070297biological_processregulation of phosphorelay signal transduction system
F0106310molecular_functionprotein serine kinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 801
ChainResidue
ATHR295
AGLU318
AMG802
AATP901
BARG459

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 802
ChainResidue
BTPO432
ATHR290
ALYS294
AMG801
AATP901

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 701
ChainResidue
ATHR53
AASP145
AATP903

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 702
ChainResidue
ASER48
AGLY49
AATP903
BPHE199
BLYS224

site_idAC5
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ATP A 901
ChainResidue
ATHR290
AGLY291
ATHR292
AGLY293
ALYS294
ATHR295
ALEU296
ASER330
ATRP331
AARG451
AILE472
AMG801
AMG802
BLYS457
BMET458
BARG459
BGLY460
BSER461
BTRP462
BHIS463
BLYS465

site_idAC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ATP A 903
ChainResidue
AGLY49
ATHR50
AGLY51
ALYS52
ATHR53
ALEU54
ASER89
APHE90
AARG218
AILE239
ATHR240
AHOH526
AMG701
AMG702
BLYS224
BLEU225
BARG226
BTHR228
BSER229
BHIS230
BLYS232

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 520
ChainResidue
ATPO432
ALYS457
AARG459
FTHR290
FATP901

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B 701
ChainResidue
BTHR53
BASP145
BATP903

site_idAC9
Number of Residues19
DetailsBINDING SITE FOR RESIDUE ATP B 901
ChainResidue
BTHR290
BGLY291
BTHR292
BGLY293
BLYS294
BTHR295
BLEU296
BGLU318
BSER330
BTRP331
BARG451
BILE472
CLYS457
CMET458
CARG459
CSER461
CTRP462
CHIS463
CLYS465

site_idBC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ATP B 903
ChainResidue
BMG701
CLYS224
CLEU225
CARG226
CGLY227
CTHR228
CSER229
CHIS230
CLYS232
BGLY49
BTHR50
BGLY51
BLYS52
BTHR53
BLEU54
BGLU78
BSER89
BPHE90
BILE239
BTHR240
BASP241

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 801
ChainResidue
CTHR295
CGLU318
CGLU319
CASP378
CATP901

site_idBC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MG C 701
ChainResidue
CATP903

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG C 702
ChainResidue
CTHR53
CGLU78
CATP903
DARG226

site_idBC5
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ATP C 901
ChainResidue
CTHR290
CGLY291
CTHR292
CGLY293
CLYS294
CTHR295
CLEU296
CSER330
CTRP331
CARG451
CMG801
CMG802
DLYS457
DMET458
DARG459
DSER461
DTRP462
DHIS463
DLYS465
DHOH526

site_idBC6
Number of Residues18
DetailsBINDING SITE FOR RESIDUE ATP C 903
ChainResidue
CSER48
CGLY49
CTHR50
CGLY51
CLYS52
CTHR53
CLEU54
CSER89
CILE239
CTHR240
CMG701
CMG702
DLYS224
DLEU225
DARG226
DGLY227
DTHR228
DHIS230

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG C 802
ChainResidue
CTHR290
CATP901

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG D 801
ChainResidue
DTHR290
DMG520
DATP901

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG D 520
ChainResidue
DTHR295
DGLU319
DMG801
DATP901
EARG459

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG D 702
ChainResidue
DTHR53
DASP145
DATP903

site_idCC2
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ATP D 901
ChainResidue
DTHR290
DGLY291
DTHR292
DGLY293
DLYS294
DTHR295
DLEU296
DSER330
DTRP331
DARG451
DILE472
DMG520
DMG801
ELYS457
EARG459
EGLY460
ESER461
ETRP462
EHIS463
ELYS465

site_idCC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE ATP D 903
ChainResidue
DGLY49
DTHR50
DGLY51
DLYS52
DTHR53
DLEU54
DGLU78
DSER89
DPHE90
DILE239
DASP241
DMG702
ELYS224
ELEU225
EARG226
EGLY227
ETHR228
EHIS230
EMG701

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG E 801
ChainResidue
ETHR295
EGLU318
EGLU319
EATP901
FARG459

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG E 701
ChainResidue
DSER48
DLYS52
DATP903
EPHE199

site_idCC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG E 520
ChainResidue
ESER48
EATP903
FPHE199
FLYS224

site_idCC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG E 702
ChainResidue
ETHR53
EATP903

site_idCC8
Number of Residues19
DetailsBINDING SITE FOR RESIDUE ATP E 901
ChainResidue
ETHR290
EGLY291
ETHR292
EGLY293
ELYS294
ETHR295
ELEU296
ETRP331
EARG451
EILE472
ESER473
EMG801
FLYS457
FMET458
FARG459
FSER461
FTRP462
FHIS463
FLYS465

site_idCC9
Number of Residues20
DetailsBINDING SITE FOR RESIDUE ATP E 903
ChainResidue
EGLY49
ETHR50
EGLY51
ELYS52
ETHR53
ELEU54
EGLU78
ESER89
EPHE90
EILE239
ETHR240
EASP241
EMG520
EHOH521
EMG702
FLYS224
FLEU225
FARG226
FTHR228
FHIS230

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG F 801
ChainResidue
FTHR295
FGLU318
FGLU319
FATP901

site_idDC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG F 701
ChainResidue
FTHR53
FASP145
FATP903

site_idDC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG F 702
ChainResidue
APHE199
ALYS224
FSER48
FLYS52
FATP903

site_idDC4
Number of Residues22
DetailsBINDING SITE FOR RESIDUE ATP F 901
ChainResidue
ALYS457
AMET458
AARG459
ASER461
ATRP462
AHIS463
ALYS465
AMG520
FTHR290
FGLY291
FTHR292
FGLY293
FLYS294
FTHR295
FLEU296
FGLU318
FSER330
FTRP331
FARG451
FILE472
FSER473
FMG801

site_idDC5
Number of Residues18
DetailsBINDING SITE FOR RESIDUE ATP F 903
ChainResidue
ALYS224
AARG226
ATHR228
AHIS230
AHOH527
FGLY49
FTHR50
FGLY51
FLYS52
FTHR53
FLEU54
FGLU78
FSER89
FPHE90
FILE239
FTHR240
FMG701
FMG702

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Proton acceptor in CI (KaiC 1) => ECO:0000305|PubMed:22304631
ChainResidueDetails
DGLU77
FGLU77
CGLU77

site_idSWS_FT_FI2
Number of Residues3
DetailsACT_SITE: Proton acceptor in CII (KaiC 2) => ECO:0000305|PubMed:22304631
ChainResidueDetails
CGLU318
DGLU318
FGLU318

site_idSWS_FT_FI3
Number of Residues75
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01836, ECO:0000269|PubMed:15304218, ECO:0000269|PubMed:16628225, ECO:0000269|PubMed:22304631, ECO:0007744|PDB:1TF7, ECO:0007744|PDB:2GBL, ECO:0007744|PDB:4DUG
ChainResidueDetails
CGLY49
CTHR50
CGLY51
CLYS52
CLEU54
CSER89
CLYS224
CARG226
CTHR228
CHIS230
CTHR240
CASP241
CTHR290
CGLY291
CTHR292
CGLY293
CLYS294
CLEU296
CTRP331
CARG451
CLYS457
CARG459
CSER461
CHIS463
CLYS465
DGLY49
DTHR50
DGLY51
DLYS52
DLEU54
DSER89
DLYS224
DARG226
DTHR228
DHIS230
DTHR240
DASP241
DTHR290
DGLY291
DTHR292
DGLY293
DLYS294
DLEU296
DTRP331
DARG451
DLYS457
DARG459
DSER461
DHIS463
DLYS465
FGLY49
FTHR50
FGLY51
FLYS52
FLEU54
FSER89
FLYS224
FARG226
FTHR228
FHIS230
FTHR240
FASP241
FTHR290
FGLY291
FTHR292
FGLY293
FLYS294
FLEU296
FTRP331
FARG451
FLYS457
FARG459
FSER461
FHIS463
FLYS465

site_idSWS_FT_FI4
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01836, ECO:0007744|PDB:4DUG, ECO:0007744|PDB:4TL6, ECO:0007744|PDB:7DXQ
ChainResidueDetails
CTHR53
DTHR53
FTHR53

site_idSWS_FT_FI5
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01836, ECO:0000269|PubMed:15304218, ECO:0000269|PubMed:16628225, ECO:0007744|PDB:1TF7, ECO:0007744|PDB:2GBL
ChainResidueDetails
CLEU225
CMET458
DLEU225
DMET458
FLEU225
FMET458

site_idSWS_FT_FI6
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01836, ECO:0000269|PubMed:15304218, ECO:0000269|PubMed:16628225, ECO:0007744|PDB:1U9I, ECO:0007744|PDB:2GBL, ECO:0007744|PDB:4DUG, ECO:0007744|PDB:7DXQ
ChainResidueDetails
CTHR295
DTHR295
FTHR295

site_idSWS_FT_FI7
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01836, ECO:0000269|PubMed:15304218, ECO:0000269|PubMed:16628225
ChainResidueDetails
CGLU318
DGLU318
FGLU318

site_idSWS_FT_FI8
Number of Residues3
DetailsMOD_RES: Phosphoserine; by autocatalysis => ECO:0000255|HAMAP-Rule:MF_01836, ECO:0000269|PubMed:15347809, ECO:0000269|PubMed:15347812, ECO:0000269|PubMed:17717528, ECO:0000269|PubMed:17916691, ECO:0007744|PDB:1U9I, ECO:0007744|PDB:2GBL
ChainResidueDetails
CASP431
DASP431
FASP431

site_idSWS_FT_FI9
Number of Residues3
DetailsMOD_RES: Phosphothreonine; by autocatalysis => ECO:0000255|HAMAP-Rule:MF_01836, ECO:0000269|PubMed:15304218, ECO:0000269|PubMed:15347809, ECO:0000269|PubMed:15347812, ECO:0000269|PubMed:17717528, ECO:0000269|PubMed:17916691, ECO:0007744|PDB:1U9I, ECO:0007744|PDB:2GBL
ChainResidueDetails
CTHR432
DTHR432
FTHR432

221051

PDB entries from 2024-06-12

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