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3GVE

Crystal structure of calcineurin-like phosphoesterase YfkN from Bacillus subtilis

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0009166biological_processnucleotide catabolic process
A0016787molecular_functionhydrolase activity
A0016788molecular_functionhydrolase activity, acting on ester bonds
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0009166biological_processnucleotide catabolic process
B0016787molecular_functionhydrolase activity
B0016788molecular_functionhydrolase activity, acting on ester bonds
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MN A 402
ChainResidue
AASP16
AHIS18
AASP61
AHIS248
AHOH398
AMG403
AHOH424

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG A 403
ChainResidue
AHIS213
AHIS246
AMN402
AHOH424
ACIT502
AASP61
AASN105

site_idAC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE CIT A 502
ChainResidue
AASN105
AHIS106
ATRP175
AHIS246
AHOH340
AHOH398
AMG403
AHOH410
AHOH424
AHOH577
AHOH589
AHOH622

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MN B 401
ChainResidue
BASP16
BHIS18
BASP61
BHIS248
BHOH396
BMG404
BHOH734

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG B 404
ChainResidue
BASP61
BASN105
BHIS213
BHIS246
BMN401
BCIT501
BHOH734

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 405
ChainResidue
BASN105
BHIS106
BASN109
BHOH384
BCIT501

site_idAC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE CIT B 501
ChainResidue
BASN105
BHIS106
BTRP175
BHIS246
BHOH395
BHOH396
BMG404
BMG405
BHOH494
BHOH633
BHOH734

Functional Information from PROSITE/UniProt
site_idPS00785
Number of Residues13
Details5_NUCLEOTIDASE_1 5'-nucleotidase signature 1. LsILATtDiHAnM
ChainResidueDetails
ALEU9-MSE21

site_idPS00786
Number of Residues12
Details5_NUCLEOTIDASE_2 5'-nucleotidase signature 2. YdagtLGNHEFN
ChainResidueDetails
ATYR98-ASN109

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP16
AHIS18
AHIS248
BASP16
BHIS18
BASP61
BASN105
BHIS213
BHIS246
BHIS248
AASP61
AASN105
AHIS213
AHIS246

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PDB entries from 2024-06-12

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