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3GIJ

Dpo4 extension ternary complex with oxoG(syn)-A(anti) and oxoG(anti)-A(syn) pairs

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues23
DetailsBINDING SITE FOR RESIDUE DGT A 414
ChainResidue
AASP7
AARG51
AASP105
ALYS159
ACA415
ACA416
AHOH501
AHOH511
AHOH640
AHOH721
AHOH731
APHE8
DHOH502
D2DA814
EDC905
E8OG906
ATYR10
APHE11
ATYR12
AVAL32
AALA44
ATHR45
ATYR48

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE CA A 415
ChainResidue
AASP7
AGLU106
ALYS159
ADGT414
AHOH501
DHOH502
DHOH717
D2DA814

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 416
ChainResidue
AASP7
APHE8
AASP105
ADGT414

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 417
ChainResidue
AALA181
AILE186
AHOH512
DHOH514
DHOH516

site_idAC5
Number of Residues19
DetailsBINDING SITE FOR RESIDUE DGT B 1414
ChainResidue
BHOH624
BPHE1008
BASP1009
BTYR1010
BPHE1011
BTYR1012
BVAL1032
BALA1044
BTHR1045
BTYR1048
BARG1051
BALA1057
BASP1105
BLYS1159
BCA1415
BCA1416
H2DA1814
JDC1905
J8OG1906

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 1415
ChainResidue
BASP1007
BGLU1106
BDGT1414
BHOH1501
BHOH1502
H2DA1814

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 1416
ChainResidue
BASP1007
BPHE1008
BASP1105
BDGT1414

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 1417
ChainResidue
BALA1181
BVAL1183
BILE1186
BHOH1515
BHOH1516
HDG1813

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU1106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP1007
BASP1105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR1012

221051

PDB entries from 2024-06-12

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