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3EC0

High Resolution HIV-2 Protease Structure in Complex with Antiviral Inhibitor GRL-06579A

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
B0004190molecular_functionaspartic-type endopeptidase activity
B0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE GRL A 201
ChainResidue
AASP25
AHOH1017
AHOH1079
BASP125
BGLY127
BALA128
BASP129
BASP130
BVAL147
BGLY148
BGLY149
AGLY27
BILE150
BCL502
AASP29
AASP30
AILE32
AGLY48
AGLY49
AILE82
AILE84

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE IMD A 304
ChainResidue
AGLN2
APHE3
ALEU99
AZN403
AHOH1007
BPRO101

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE IMD A 306
ChainResidue
ATYR14
AGLY17
AGLU63
AGLU65
AZN406
AZN410
AHOH1011

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 403
ChainResidue
ALEU99
AIMD304
ACL508
AHOH1006
AHOH1007

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 405
ChainResidue
AASP79
AHOH1028
AHOH1029
BGLU137

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 406
ChainResidue
AGLU65
AGLU65
AIMD306
AHOH1004
AHOH1004

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 410
ChainResidue
AGLU63
AGLU65
AIMD306
ACL507
AHOH1010
AHOH1011

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 507
ChainResidue
AGLU63
AASN68
ALYS69
ALYS70
AZN410

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL A 508
ChainResidue
ALYS7
ALEU99
AZN403
AHOH1007
AHOH1097
AHOH1178

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA A 601
ChainResidue
AASN40
AASN41
APRO44
AHOH1063
AHOH1084
AHOH1101
BASN140

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE IMD B 301
ChainResidue
BGLU121
BILE146
BPHE153
BASN155
BASP179
BIMD302
BZN401

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE IMD B 302
ChainResidue
BGLU121
BPHE153
BASP179
BIMD301
BZN401
BHOH1137

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE IMD B 303
ChainResidue
BASP130
BILE146
BMET176
BZN402
BZN409
BCL501
BCL502

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE IMD B 305
ChainResidue
AARG8
APRO81
BTRP106
BZN404
BCL505
BHOH1058

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 401
ChainResidue
BASP179
BIMD301
BIMD302
BGLU121

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 402
ChainResidue
BASP130
BIMD303
BZN409
BCL502
BCL506
BHOH1001

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 404
ChainResidue
BIMD305
BCL504
BCL505
BHOH1009

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 407
ChainResidue
BGLU165
BCL503
BHOH1002
BHOH1003
BHOH1005

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ZN B 408
ChainResidue
BGLU158
BHOH1150

site_idCC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 409
ChainResidue
BASP130
BIMD303
BZN402
BCL506
BHOH1001

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B 501
ChainResidue
BTHR112
BLYS145
BILE146
BIMD303
BHOH1049
BHOH1088

site_idCC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B 502
ChainResidue
AGRL201
BVAL147
BGLY148
BIMD303
BZN402
BHOH1008

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 503
ChainResidue
BGLU165
BZN407
BHOH1003
BHOH1005

site_idCC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL B 504
ChainResidue
BSER104
BLEU105
BTRP106
BLYS107
BZN404
BHOH1095

site_idCC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 505
ChainResidue
AARG8
BIMD305
BZN404

site_idCC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 506
ChainResidue
BASP130
BZN402
BZN409
BHOH1001

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. VLLDTGADDSIV
ChainResidueDetails
AVAL22-VAL33

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: For protease activity; shared with dimeric partner => ECO:0000255|PROSITE-ProRule:PRU10094
ChainResidueDetails
AASP25
BASP125

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Cleavage; by viral protease => ECO:0000250
ChainResidueDetails
ALEU99
BLEU199

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PDB entries from 2024-06-12

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