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3D9J

Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the Carboxy-Terminal Domain of RNA-Polymerase II

Functional Information from GO Data
ChainGOidnamespacecontents
A0000993molecular_functionRNA polymerase II complex binding
A0003729molecular_functionmRNA binding
A0006369biological_processtermination of RNA polymerase II transcription
A0006378biological_processmRNA polyadenylation
A0006379biological_processmRNA cleavage
B0000993molecular_functionRNA polymerase II complex binding
B0003729molecular_functionmRNA binding
B0006369biological_processtermination of RNA polymerase II transcription
B0006378biological_processmRNA polyadenylation
B0006379biological_processmRNA cleavage
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NH4 A 301
ChainResidue
AGLU48
APHE88
AILE92
ATHR95

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NH4 A 302
ChainResidue
APRO56
AGLU57
ALYS59
AASP106

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NH4 A 303
ChainResidue
ALYS81
AASP133
APHE77

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NH4 A 304
ChainResidue
AILE37
ASER73
APHE77
AASP82

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NH4 A 305
ChainResidue
AASP67
AARG71
ALEU116
ATRP117

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NH4 A 306
ChainResidue
ATYR12
APHE50
ALYS53
ACYS54

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NH4 B 307
ChainResidue
BILE37
BSER73
BASP82

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NH4 B 308
ChainResidue
BILE21
BSER22

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NH4 B 309
ChainResidue
BLYS38
BPHE39
BTYR40
BLYS41

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NH4 B 310
ChainResidue
BILE37
BPHE77
BLYS81

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE NH4 B 311
ChainResidue
BTYR40
BPRO86

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NH4 B 312
ChainResidue
BPRO20
BILE21
BPRO61
BTYR64

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 2000
ChainResidue
ALYS35
AASN91
ASER94

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 2001
ChainResidue
ATYR40
AARG87
AASN90

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 2002
ChainResidue
ALYS41
AARG87

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 2003
ChainResidue
AARG71
ALEU116
AASN120
BALA136
BHIS140

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 2004
ChainResidue
APRO20
ATYR64
ALYS109

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 2005
ChainResidue
AGLU10
ATYR17
ALYS25
AGLN28
BTYR12
BLYS49

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 2006
ChainResidue
BTYR40
BARG87
BASN90

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 2007
ChainResidue
BLYS41
BARG87

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 2008
ChainResidue
BLYS35
BASN91
BSER94

site_idCC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 2009
ChainResidue
BPRO103
BGLY104

site_idCC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 1000
ChainResidue
AGLN72
AHIS75
AGLN97
AARG101

site_idCC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 1001
ChainResidue
ALYS31
AARG101

site_idCC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1002
ChainResidue
ATYR17
BASN8
BTYR12
BSER46
BLYS49
BPHE50

site_idCC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1003
ChainResidue
ALYS35
AALA36
AILE37
ALYS38
ASER89
AASN90
AILE127

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:20388717
ChainResidueDetails
ATHR6
BTHR6

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1)
ChainResidueDetails
ALYS18
BLYS18

218853

PDB entries from 2024-04-24

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