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3BT7

Structure of E. coli 5-Methyluridine Methyltransferase TrmA in complex with 19 nucleotide T-arm analogue

Functional Information from GO Data
ChainGOidnamespacecontents
A0000049molecular_functiontRNA binding
A0005829cellular_componentcytosol
A0006396biological_processRNA processing
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0008173molecular_functionRNA methyltransferase activity
A0019843molecular_functionrRNA binding
A0030488biological_processtRNA methylation
A0030697molecular_functiontRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent
A0032259biological_processmethylation
A0061818biological_processtRNA folding
B0000049molecular_functiontRNA binding
B0005829cellular_componentcytosol
B0006396biological_processRNA processing
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0008173molecular_functionRNA methyltransferase activity
B0019843molecular_functionrRNA binding
B0030488biological_processtRNA methylation
B0030697molecular_functiontRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent
B0032259biological_processmethylation
B0061818biological_processtRNA folding
Functional Information from PROSITE/UniProt
site_idPS01230
Number of Residues30
DetailsTRMA_1 RNA methyltransferase trmA family signature 1. DPPRsGldsetekmvqaypr.....ILYiSCNpeT
ChainResidueDetails
AASP299-THR328

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Nucleophile => ECO:0000255|HAMAP-Rule:MF_01011, ECO:0000269|PubMed:18451029
ChainResidueDetails
ACYS324
BCYS324

site_idSWS_FT_FI2
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01011, ECO:0000269|PubMed:18451029
ChainResidueDetails
AGLN358
BGLN358

site_idSWS_FT_FI3
Number of Residues10
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01011
ChainResidueDetails
AGLN190
BGLU239
BASP299
ATYR218
AASN223
AGLU239
AASP299
BGLN190
BTYR218
BASN223

site_idSWS_FT_FI4
Number of Residues6
DetailsSITE: Interaction with RNA
ChainResidueDetails
AARG302
BGLN190
BASP299
BARG302
AGLN190
AASP299

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PDB entries from 2024-06-12

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