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3BGJ

Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 6-iodo-UMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE U5P A3000
ChainResidue
ASER68
AGLN241
ATYR243
AGLY261
AARG262
AHOH3002
AHOH3005
AHOH3026
BASP128
BTHR132
AASP70
ALYS92
AHIS94
AASP123
ALYS125
AMET182
ASER183
APRO228

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE U5P B3000
ChainResidue
AASP128
ATHR132
BSER68
BASP70
BLYS92
BHIS94
BASP123
BLYS125
BMET182
BSER183
BPRO228
BGLN241
BTYR243
BGLY261
BARG262
BHOH3001
BHOH3002
BHOH3006

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B1000
ChainResidue
BLEU232
BGLU233
BALA234

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IFeDrKfaDIGnTV
ChainResidueDetails
AILE120-VAL133

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: For OMPdecase activity => ECO:0000269|PubMed:18184586
ChainResidueDetails
AASP123
ALYS125
AASP128
BASP123
BLYS125
BASP128

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:18184586, ECO:0007744|PDB:2QCD
ChainResidueDetails
ATHR132
BSER68
BASP128
BTHR132
ASER68
AASP128

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:18184586, ECO:0007744|PDB:2QCD, ECO:0007744|PDB:2QCH
ChainResidueDetails
AASP70
ASER183
BASP70
BSER183
BGLN241
BGLY261
AGLN241
AGLY261

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:18184586, ECO:0007744|PDB:2QCL
ChainResidueDetails
ALYS92
ALYS125
BLYS92
BLYS125

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ASER25
BSER25

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PDB entries from 2024-05-15

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