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2YND

Plasmodium vivax N-myristoyltransferase in complex with a pyrazole sulphonamide inhibitor.

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0005737cellular_componentcytoplasm
A0006499biological_processN-terminal protein myristoylation
A0016746molecular_functionacyltransferase activity
A0046872molecular_functionmetal ion binding
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0005737cellular_componentcytoplasm
B0006499biological_processN-terminal protein myristoylation
B0016746molecular_functionacyltransferase activity
B0046872molecular_functionmetal ion binding
C0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
C0005737cellular_componentcytoplasm
C0006499biological_processN-terminal protein myristoylation
C0016746molecular_functionacyltransferase activity
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE DMS A 999
ChainResidue
AGLU159
APHE281
ATRP289
AHOH2402

site_idAC2
Number of Residues37
DetailsBINDING SITE FOR RESIDUE NHW A 1000
ChainResidue
ATYR95
AVAL96
AASN161
APHE162
ALEU163
ACYS164
AVAL165
AARG170
ASER171
ALYS172
AARG173
ALEU174
AALA175
APRO176
ATHR183
AILE186
ATRP192
ATYR196
ATHR197
ALEU202
ATYR393
A6461001
AMG1415
AHOH2001
AHOH2231
AHOH2236
AHOH2462
AHOH2463
AHOH2464
AHOH2465
AHOH2466
AHOH2467
ATYR28
ALYS29
APHE30
ATRP31
AASN94

site_idAC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE 646 A 1001
ChainResidue
AVAL96
AASP98
APHE103
APHE105
ATYR107
AGLY199
ATYR211
AHIS213
APHE226
ASER319
ALEU330
ATYR334
AASN365
ALEU388
ALEU410
ANHW1000
AHOH2150
AHOH2251
AHOH2270

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DMS B 999
ChainResidue
BGLU159
BPHE281
BTRP289
BILE407
BHOH2181
BHOH2363

site_idAC5
Number of Residues38
DetailsBINDING SITE FOR RESIDUE NHW B 1000
ChainResidue
BHOH2415
BHOH2416
BHOH2417
BHOH2418
BHOH2419
BTYR28
BLYS29
BPHE30
BTRP31
BASN94
BTYR95
BASN161
BPHE162
BLEU163
BCYS164
BVAL165
BARG170
BSER171
BLYS172
BARG173
BLEU174
BALA175
BPRO176
BTHR183
BTRP192
BGLN193
BALA194
BTHR197
BLEU202
BTYR393
B6461001
BMG1414
BHOH2002
BHOH2003
BHOH2207
BHOH2212
BHOH2413
BHOH2414

site_idAC6
Number of Residues20
DetailsBINDING SITE FOR RESIDUE 646 B 1001
ChainResidue
BVAL96
BASP98
BPHE103
BPHE105
BTYR107
BGLY199
BTYR211
BHIS213
BPHE226
BSER319
BLEU330
BTYR334
BASN365
BLEU388
BLEU410
BNHW1000
BHOH2129
BHOH2225
BHOH2240
BHOH2420

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE DMS C 999
ChainResidue
CGLU159
CPHE281
CTRP289
CHOH2326

site_idAC8
Number of Residues38
DetailsBINDING SITE FOR RESIDUE NHW C 1000
ChainResidue
CTYR28
CLYS29
CPHE30
CTRP31
CTYR95
CASN161
CPHE162
CLEU163
CCYS164
CVAL165
CARG170
CSER171
CLYS172
CARG173
CLEU174
CALA175
CPRO176
CTHR183
CILE186
CTRP192
CGLN193
CALA194
CTYR196
CTHR197
CLEU202
CTYR393
C6461001
CMG1414
CHOH2002
CHOH2005
CHOH2206
CHOH2213
CHOH2371
CHOH2372
CHOH2373
CHOH2374
CHOH2375
CHOH2376

site_idAC9
Number of Residues18
DetailsBINDING SITE FOR RESIDUE 646 C 1001
ChainResidue
CVAL96
CASP98
CPHE103
CPHE105
CTYR107
CGLY199
CTYR211
CHIS213
CPHE226
CSER319
CLEU330
CTYR334
CLEU388
CLEU410
CNHW1000
CHOH2133
CHOH2225
CHOH2377

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1414
ChainResidue
AARG210
ATYR212
ALYS373
AHOH2442
AHOH2470
BARG210
BLYS373

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 1415
ChainResidue
ALEU169
ASER171
ALYS172
AARG173
ALEU174
ANHW1000

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 1414
ChainResidue
BLEU169
BSER171
BLYS172
BARG173
BLEU174
BNHW1000

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG C 1414
ChainResidue
CLEU169
CARG170
CSER171
CLYS172
CARG173
CLEU174
CNHW1000

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1416
ChainResidue
ALYS180
ALEU248
AARG358
AHOH2071

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 1415
ChainResidue
BLYS180
BTHR247
BLEU248
BARG358

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL C 1415
ChainResidue
CTYR65
CLYS180
CLEU248
CARG358
CHOH2084

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EVNFLCvHK
ChainResidueDetails
AGLU159-LYS167

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGeGDG
ChainResidueDetails
ALYS380-GLY386

220472

PDB entries from 2024-05-29

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