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2RDJ

Snapshots of a Y-family DNA polymerase in replication: Dpo4 in apo and binary/ternary complex forms

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 353
ChainResidue
AASP7
APHE8
AASP105
ATMP355
AHOH426
CHOH25

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 354
ChainResidue
AHOH421
AHOH431
AHOH497
CHOH17
AALA181
AILE186
AHOH420

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 353
ChainResidue
BASP7
BPHE8
BASP105
BHOH368
EDT14
EHOH26

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 354
ChainResidue
BALA181
BILE186
BHOH402
BHOH406
EHOH15

site_idAC5
Number of Residues18
DetailsBINDING SITE FOR RESIDUE TMP A 355
ChainResidue
APHE8
ATYR10
APHE11
ATYR12
AALA44
ATHR45
AARG51
AASP105
ACA353
AGOL356
AHOH375
AHOH427
AHOH445
AHOH499
CDT14
CHOH25
DDT4
DDA5

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 356
ChainResidue
ALYS56
AALA57
ATMP355
AHOH479
AHOH495

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR12

221051

PDB entries from 2024-06-12

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